Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EIH17_RS09660 Genome accession   NZ_CP089782
Coordinates   1888705..1890075 (-) Length   456 a.a.
NCBI ID   WP_071951759.1    Uniprot ID   A0A7Z0HVV2
Organism   Leuconostoc mesenteroides strain KNU-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1883705..1895075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EIH17_RS09645 gltX 1885048..1886544 (-) 1497 WP_179876378.1 glutamate--tRNA ligase -
  EIH17_RS09650 - 1886643..1887230 (-) 588 WP_232683736.1 TetR/AcrR family transcriptional regulator -
  EIH17_RS09655 - 1887365..1888603 (+) 1239 WP_011679117.1 YhgE/Pip domain-containing protein -
  EIH17_RS09660 radA 1888705..1890075 (-) 1371 WP_071951759.1 DNA repair protein RadA Machinery gene
  EIH17_RS09665 - 1890123..1890662 (-) 540 WP_011679115.1 deoxyuridine 5'-triphosphate nucleotidohydrolase -
  EIH17_RS09670 - 1890895..1891176 (+) 282 WP_011679114.1 GNAT family N-acetyltransferase -
  EIH17_RS09675 rpiA 1891173..1891859 (+) 687 WP_002816154.1 ribose-5-phosphate isomerase RpiA -
  EIH17_RS09680 - 1891978..1893408 (+) 1431 WP_010292838.1 aspartate ammonia-lyase -
  EIH17_RS09685 - 1893440..1894378 (-) 939 WP_232683737.1 DUF1810 family protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49214.43 Da        Isoelectric Point: 5.6185

>NTDB_id=638639 EIH17_RS09660 WP_071951759.1 1888705..1890075(-) (radA) [Leuconostoc mesenteroides strain KNU-2]
MAKVKTQFICSNCGFVSARYLGRCSNCGEWGTLVEEKIQPESNDRKSRVSLDGRNAKVEKINEITSEETPRVATKLKELN
RVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSGQLAQEGRVLYVTGEESATQVKLRADRLGVGHDEFYLYPETDMTAVKKQ
IEELQPNFVVIDSVQTMQEPDVSSAVGSVSQIREVTADLLQIAKTNNISIFIVGHVTKDGAIAGPKILEHMVDTVLYFEG
DSNYKYRILRAVKNRFGATNELGIFEMRNGGLIEVANPSEIFLEERLSGATGSAIVVALEGSRPILVELQALVTPTVFGN
AQRTAAGLDRNRVSLIMAVLEKRANLLLQNQDAYLKAAGGVKLDEPAIDLAIAVALASSYHDKESRPSDVFVGEIGLTGE
VRSVADIEGRLKEAKKLGFKRAIVPKNNLNGVELPQGIQVIGVTTLSEALKIALGE

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=638639 EIH17_RS09660 WP_071951759.1 1888705..1890075(-) (radA) [Leuconostoc mesenteroides strain KNU-2]
ATCGCTAAAGTAAAAACACAATTTATATGTTCCAACTGCGGTTTTGTTTCGGCGCGGTATTTAGGACGCTGCTCAAATTG
TGGTGAATGGGGCACGCTTGTTGAAGAAAAAATCCAACCAGAATCAAATGATCGTAAAAGTCGTGTGAGTCTAGATGGAC
GCAATGCTAAAGTTGAAAAAATAAACGAGATTACATCTGAAGAGACACCGCGCGTAGCAACTAAGCTTAAAGAACTAAAC
CGAGTTTTAGGTGGTGGTGTTGTCCCAGGTTCGATGGTTTTGATTGGTGGTGATCCTGGTATTGGCAAGTCAACATTACT
ACTTCAAGTATCTGGACAACTTGCTCAAGAAGGACGGGTACTATATGTGACCGGCGAAGAGTCTGCCACACAAGTGAAAC
TGCGTGCCGACCGCTTAGGCGTTGGGCACGATGAGTTTTATTTATATCCGGAAACGGATATGACGGCCGTGAAAAAGCAG
ATTGAGGAATTACAACCGAATTTTGTTGTTATTGACTCGGTACAAACCATGCAAGAACCTGATGTCTCATCGGCTGTTGG
ATCAGTGTCACAAATTCGAGAAGTGACGGCCGATCTGTTGCAAATCGCTAAGACTAATAATATTTCTATATTTATAGTAG
GGCATGTGACTAAAGATGGCGCCATAGCGGGGCCAAAAATTCTGGAGCACATGGTTGATACAGTATTGTACTTTGAAGGA
GATAGTAATTATAAGTACCGCATTCTGCGTGCGGTTAAAAATCGGTTTGGCGCAACGAATGAATTAGGTATTTTTGAAAT
GCGTAATGGCGGTTTGATAGAGGTAGCTAATCCCTCTGAGATTTTCTTAGAAGAACGTTTATCTGGTGCCACTGGATCGG
CAATTGTGGTCGCGTTAGAAGGATCACGACCTATTTTGGTTGAATTACAAGCCTTAGTAACGCCGACTGTATTTGGTAAC
GCACAGCGTACAGCAGCAGGCCTCGATAGGAATCGTGTGTCATTGATTATGGCTGTATTAGAAAAACGCGCTAACTTATT
ATTACAAAATCAAGATGCGTATTTAAAGGCAGCAGGTGGCGTGAAACTTGATGAACCAGCAATTGATTTAGCGATTGCTG
TTGCTCTAGCTAGTTCGTATCATGATAAAGAATCAAGGCCAAGTGATGTCTTTGTTGGCGAAATTGGTCTAACTGGCGAA
GTCCGTAGCGTAGCAGATATTGAAGGACGATTAAAAGAAGCTAAAAAATTGGGCTTTAAGCGTGCTATTGTTCCTAAAAA
TAATTTAAATGGCGTCGAATTACCTCAAGGTATTCAAGTTATTGGAGTAACAACATTAAGTGAGGCGCTTAAAATTGCCT
TAGGAGAATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(362-428)

AAA domain (AAA_25)

(68-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z0HVV2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

66.962

98.904

0.662
  radA Streptococcus pneumoniae D39

66.962

98.904

0.662
  radA Streptococcus pneumoniae R6

66.962

98.904

0.662
  radA Streptococcus pneumoniae TIGR4

66.962

98.904

0.662
  radA Streptococcus mitis NCTC 12261

66.741

98.904

0.66
  radA Streptococcus mitis SK321

66.741

98.904

0.66
  radA Bacillus subtilis subsp. subtilis str. 168

61.488

100

0.616