Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   U064_RS07485 Genome accession   NC_022911
Coordinates   1521261..1521836 (-) Length   191 a.a.
NCBI ID   WP_038420248.1    Uniprot ID   -
Organism   Helicobacter pylori BM012S     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1516261..1526836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U064_RS07475 (U064_1497) - 1518578..1519192 (-) 615 WP_023592615.1 restriction endonuclease subunit S -
  U064_RS07480 (U064_1498) - 1519189..1521228 (-) 2040 WP_023592616.1 HsdM family class I SAM-dependent methyltransferase -
  U064_RS07485 (U064_1499) comFC 1521261..1521836 (-) 576 WP_038420248.1 ComF family protein Machinery gene
  U064_RS07490 (U064_1500) tmk 1521824..1522399 (-) 576 WP_023592618.1 dTMP kinase -
  U064_RS07495 (U064_1501) coaD 1522401..1522874 (-) 474 WP_023592619.1 pantetheine-phosphate adenylyltransferase -
  U064_RS07500 (U064_1502) - 1522874..1523437 (-) 564 WP_023592620.1 UbiX family flavin prenyltransferase -
  U064_RS07505 (U064_1503) flgA 1523447..1524103 (-) 657 WP_023592621.1 flagellar basal body P-ring formation chaperone FlgA -
  U064_RS07510 (U064_1504) uvrD 1524100..1526145 (-) 2046 WP_038420449.1 DNA helicase UvrD -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21351.90 Da        Isoelectric Point: 8.8864

>NTDB_id=63853 U064_RS07485 WP_038420248.1 1521261..1521836(-) (comFC) [Helicobacter pylori BM012S]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEVEELIKSKYALIGSRILPLLSQKAGKEFVKILQEQG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRANNAVSYAGKSLEFRANNPRDFTFKGDESLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSTDE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=63853 U064_RS07485 WP_038420248.1 1521261..1521836(-) (comFC) [Helicobacter pylori BM012S]
ATGCGTTGTTTAACCTGTTTGAAGCTTTCTTTTAAGCCTCTTTGTCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAGTAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCAAAGAATTTGTGAAAATCTTACAAGAACAAGGC
TTGAACATTCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGCCAAGGCAATCTAAAAGCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGTGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATGAAAGTTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCCCACTTTGCGATTGCGCTTTG
CAGCACGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

96.859

100

0.969

Multiple sequence alignment