Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   SLV14_RS38730 Genome accession   NZ_CP106840
Coordinates   2417777..2417893 (-) Length   38 a.a.
NCBI ID   WP_398948952.1    Uniprot ID   -
Organism   Streptomyces sp. Je 1-4     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2412777..2422893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SLV14_RS10200 (SLV14_002046) - 2412857..2413165 (-) 309 Protein_2036 IS5/IS1182 family transposase -
  SLV14_RS10205 (SLV14_002047) - 2413586..2414856 (+) 1271 Protein_2037 IS110 family transposase -
  SLV14_RS38725 - 2414877..2415074 (-) 198 Protein_2038 IS5/IS1182 family transposase -
  SLV14_RS10210 (SLV14_002048) - 2415050..2415526 (-) 477 WP_263269090.1 IS5 family transposase -
  SLV14_RS10215 (SLV14_002049) - 2415589..2417193 (-) 1605 WP_263269091.1 cation acetate symporter -
  SLV14_RS10220 (SLV14_002050) - 2417190..2417681 (-) 492 WP_263269092.1 DUF485 domain-containing protein -
  SLV14_RS38730 vraR 2417777..2417893 (-) 117 WP_398948952.1 hypothetical protein Regulator
  SLV14_RS10235 (SLV14_002053) - 2418912..2421032 (-) 2121 WP_018092879.1 type IIA DNA topoisomerase subunit B -
  SLV14_RS10240 (SLV14_002054) - 2421475..2421705 (+) 231 WP_006602664.1 hypothetical protein -
  SLV14_RS10245 (SLV14_002055) - 2421831..2422640 (-) 810 WP_263269093.1 serine protease -

Sequence

Protein


Download         Length: 38 a.a.        Molecular weight: 4222.89 Da        Isoelectric Point: 10.9471

>NTDB_id=638522 SLV14_RS38730 WP_398948952.1 2417777..2417893(-) (vraR) [Streptomyces sp. Je 1-4]
MKTHINNLLAKAGLRDRAQAIHYAYRHGLAQPPGQPIT

Nucleotide


Download         Length: 117 bp        

>NTDB_id=638522 SLV14_RS38730 WP_398948952.1 2417777..2417893(-) (vraR) [Streptomyces sp. Je 1-4]
GTGAAGACCCACATCAACAATCTCCTCGCCAAAGCGGGGCTACGGGACCGCGCCCAGGCCATCCACTACGCGTACCGCCA
CGGCCTCGCACAGCCGCCCGGGCAGCCCATCACCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

48.387

81.579

0.395