Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   LRP95_RS24020 Genome accession   NZ_CP089745
Coordinates   5172887..5173444 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain Pa608     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5167887..5178444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRP95_RS24000 pilR 5169163..5170500 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  LRP95_RS24005 thiO 5170546..5171640 (-) 1095 WP_020750388.1 glycine oxidase ThiO -
  LRP95_RS24010 - 5171775..5172284 (+) 510 WP_003161431.1 GspH/FimT family pseudopilin -
  LRP95_RS24015 - 5172390..5172896 (+) 507 WP_003102598.1 GspH/FimT family pseudopilin -
  LRP95_RS24020 pilV 5172887..5173444 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  LRP95_RS24025 pilW 5173441..5174265 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  LRP95_RS24030 pilX 5174262..5174849 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  LRP95_RS24035 pilY1 5174861..5178352 (+) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=638493 LRP95_RS24020 WP_003119423.1 5172887..5173444(+) (pilV) [Pseudomonas aeruginosa strain Pa608]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=638493 LRP95_RS24020 WP_003119423.1 5172887..5173444(+) (pilV) [Pseudomonas aeruginosa strain Pa608]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCAAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995