Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   SLV14_RS16460 Genome accession   NZ_CP106840
Coordinates   3846222..3847955 (-) Length   577 a.a.
NCBI ID   WP_263269856.1    Uniprot ID   -
Organism   Streptomyces sp. Je 1-4     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3841222..3852955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SLV14_RS16450 (SLV14_003299) - 3842209..3843036 (-) 828 WP_208681604.1 response regulator transcription factor -
  SLV14_RS16455 (SLV14_003300) rcrQ 3844216..3846225 (-) 2010 WP_411577457.1 ABC transporter ATP-binding protein Regulator
  SLV14_RS16460 (SLV14_003301) rcrP 3846222..3847955 (-) 1734 WP_263269856.1 ABC transporter ATP-binding protein Regulator
  SLV14_RS16465 (SLV14_003302) - 3848163..3848408 (+) 246 WP_018089808.1 MoaD/ThiS family protein -
  SLV14_RS16470 (SLV14_003303) - 3848419..3849648 (+) 1230 WP_263269859.1 hypothetical protein -
  SLV14_RS16475 (SLV14_003304) - 3849835..3850536 (+) 702 WP_208681607.1 DUF2993 domain-containing protein -
  SLV14_RS38765 - 3850763..3850870 (+) 108 WP_350252853.1 putative leader peptide -
  SLV14_RS16480 (SLV14_003305) - 3851068..3851913 (+) 846 WP_042146970.1 sulfurtransferase -
  SLV14_RS16485 (SLV14_003306) - 3851956..3852243 (+) 288 WP_006603933.1 DUF1416 domain-containing protein -
  SLV14_RS16490 (SLV14_003307) - 3852434..3852721 (+) 288 WP_078518611.1 DUF3099 domain-containing protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62951.31 Da        Isoelectric Point: 6.7651

>NTDB_id=638482 SLV14_RS16460 WP_263269856.1 3846222..3847955(-) (rcrP) [Streptomyces sp. Je 1-4]
MLVRLARAHLRPHRRSISLIVLLQLIQTLATLYLPTLNADIIDNGVVKGDTGYIFRVGGYMVAVTLLQIVCAIGAVYFGA
RTAMALGRDIRAAVFDRVQSFSAREVGAFGAPSLITRTTNDVQQVQMLVLMTFTMMVSAPIMCVGGVIMALNQDVPLSGL
LLVIVPVLGILVSLIVRRMRPLFRGMQERIDTVNRVLREQITGIRVIRAFVRDRHERERFAGANTDLYDASLRAGRLMSM
MFPLVMLIVNLSSVAVVWFGGLRIDSGSMQIGALTAFLSYLMYILMSIMMATFMVMMLPRAEVCAERIQEVLATDSSVTP
PENPVTELRRHGELELRGVEFRFPGAEQPVLRDISLTALPGETTAVIGSTGSGKSTLLGLVPRLFDATGGTVLVDGEDVR
TLDQETLAKAIGLVPQKPYLFSGTVATNLRYGNPDATDDELWHALETAQARDFVERMEGGLDAPIAQGGGNVSGGQRQRL
AIARALVRRPEIYLFDDSFSALDYATDAALRAALARETDRATVVIVAQRVSTIRGADRIVVLDEGRVVGTGTHAELMAGN
ETYREIVLSQLTEQEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=638482 SLV14_RS16460 WP_263269856.1 3846222..3847955(-) (rcrP) [Streptomyces sp. Je 1-4]
GTGTTGGTCCGACTAGCGCGGGCGCATCTGCGGCCCCACAGGCGCTCGATATCCCTGATCGTCCTGCTCCAGCTCATCCA
GACCCTGGCCACCCTCTACCTGCCCACCCTCAACGCCGACATCATTGACAACGGTGTCGTGAAGGGGGACACGGGCTACA
TCTTCCGTGTCGGCGGCTACATGGTCGCCGTCACCCTGCTGCAGATCGTCTGCGCGATCGGTGCCGTCTACTTCGGCGCC
CGTACCGCCATGGCGCTCGGCCGGGACATCCGCGCCGCGGTCTTCGACCGGGTGCAGTCCTTCTCCGCCCGGGAGGTGGG
CGCCTTCGGCGCGCCGTCGCTGATCACCCGGACCACCAATGACGTCCAACAGGTCCAGATGCTGGTGCTGATGACGTTCA
CGATGATGGTCTCGGCGCCGATCATGTGCGTCGGCGGCGTCATCATGGCGCTCAATCAGGATGTGCCGCTGTCCGGCCTG
CTCCTGGTCATCGTCCCGGTCCTCGGGATACTCGTCTCACTGATCGTGCGCCGGATGCGTCCGCTGTTCCGCGGGATGCA
GGAGCGCATCGACACCGTCAACCGCGTACTGCGCGAGCAGATCACCGGTATCCGCGTCATCCGCGCCTTCGTCCGCGACC
GGCACGAGCGCGAGCGGTTCGCCGGGGCCAACACCGATCTGTACGACGCGTCGCTGCGCGCCGGCCGGCTGATGTCGATG
ATGTTCCCGCTGGTCATGCTGATCGTGAACCTCTCCAGCGTGGCCGTCGTCTGGTTCGGCGGACTGCGCATCGACAGCGG
CTCCATGCAGATCGGTGCGCTGACCGCGTTCCTCAGCTACCTCATGTACATCCTGATGTCGATCATGATGGCGACGTTCA
TGGTGATGATGCTGCCGCGCGCCGAGGTCTGCGCCGAGCGCATCCAGGAGGTGCTGGCGACCGACTCCAGCGTCACCCCG
CCCGAGAACCCCGTCACCGAGCTCCGCCGCCACGGCGAACTGGAGCTGCGCGGCGTCGAGTTCCGCTTCCCGGGCGCCGA
GCAGCCCGTCCTCAGGGACATCTCGCTGACCGCCCTCCCCGGTGAGACCACCGCGGTCATCGGCTCGACCGGCAGCGGCA
AGTCCACCCTCCTCGGGCTCGTCCCCCGCCTCTTCGACGCGACCGGCGGCACGGTCCTGGTGGACGGTGAGGACGTCCGT
ACCCTCGACCAGGAGACGCTGGCCAAGGCCATCGGCCTGGTCCCGCAGAAGCCCTATCTCTTCTCCGGCACCGTCGCCAC
CAACCTGCGCTACGGCAATCCGGACGCCACCGACGACGAGCTGTGGCACGCCCTGGAGACCGCACAGGCGCGGGACTTCG
TCGAGCGGATGGAAGGCGGCCTGGACGCCCCCATCGCGCAGGGCGGCGGCAATGTCTCCGGCGGCCAGCGCCAGCGGCTG
GCGATCGCCCGCGCCCTGGTGCGGCGCCCCGAGATCTACCTTTTCGACGACTCCTTCTCCGCCCTGGACTACGCGACGGA
CGCCGCGCTGCGCGCCGCCCTCGCCCGCGAGACCGACCGGGCCACGGTCGTGATCGTCGCCCAGCGGGTCTCCACGATCC
GCGGCGCCGACCGGATCGTCGTCCTGGACGAGGGCCGGGTCGTCGGCACCGGCACCCACGCCGAGCTGATGGCCGGCAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTCACCGAGCAGGAGGCGGCGTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(19-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.179

97.054

0.39