Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   SLV14_RS16455 Genome accession   NZ_CP106840
Coordinates   3844216..3846225 (-) Length   669 a.a.
NCBI ID   WP_411577457.1    Uniprot ID   -
Organism   Streptomyces sp. Je 1-4     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3839216..3851225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SLV14_RS16440 (SLV14_003297) - 3839935..3841041 (-) 1107 WP_263269852.1 S1C family serine protease -
  SLV14_RS16445 (SLV14_003298) - 3841159..3842184 (-) 1026 WP_026169660.1 LacI family DNA-binding transcriptional regulator -
  SLV14_RS16450 (SLV14_003299) - 3842209..3843036 (-) 828 WP_208681604.1 response regulator transcription factor -
  SLV14_RS16455 (SLV14_003300) rcrQ 3844216..3846225 (-) 2010 WP_411577457.1 ABC transporter ATP-binding protein Regulator
  SLV14_RS16460 (SLV14_003301) rcrP 3846222..3847955 (-) 1734 WP_263269856.1 ABC transporter ATP-binding protein Regulator
  SLV14_RS16465 (SLV14_003302) - 3848163..3848408 (+) 246 WP_018089808.1 MoaD/ThiS family protein -
  SLV14_RS16470 (SLV14_003303) - 3848419..3849648 (+) 1230 WP_263269859.1 hypothetical protein -
  SLV14_RS16475 (SLV14_003304) - 3849835..3850536 (+) 702 WP_208681607.1 DUF2993 domain-containing protein -
  SLV14_RS38765 - 3850763..3850870 (+) 108 WP_350252853.1 putative leader peptide -

Sequence

Protein


Download         Length: 669 a.a.        Molecular weight: 71853.85 Da        Isoelectric Point: 6.7381

>NTDB_id=638481 SLV14_RS16455 WP_411577457.1 3844216..3846225(-) (rcrQ) [Streptomyces sp. Je 1-4]
MTTADKGAARRAEAPAATDETPQPATRRGPAPAVGPARMMGGQPTEKSMDFKGSGKRLLAQMRPERGIMSLALALGALSV
ALTVVGPKVLGHATDLIMSGIIGRQLPDGLTRAQAAGQLRAHGQDGLADMIGTMPVVPGHGIDFGAVGQVLLWVTLIYAA
ASLFGFVQARIATRVVQRAVFRMREQVEEKLARLPLSYFDKQQRGEVLSRATNDIDNIQQTLQQTLSQIVASLLTIVGVL
AMMFWISPLLALVALITVPVSVVVATKVGKRAQPQFVQQWKTTGKLNAHIEEMYTGHSLVKVFGRQRESAELFREQNEAL
YAAGFKAQFISGIIQPAMMFIGNLNYVLVAVVGGLRVASGALSIGDVQAFIQYSRQFSQPLTQVASMANLVQSGVASAER
VFELLDATEQDPDPVRPARPERIEGRVEFEDVSFRYAPDKPLIEDLALAVHPGQTVAIVGPTGAGKTTLVNLLMRFYEVS
GGRITLDGVDIAAMSREELRAHIGMVLQDTWLFGGTIAENIAYGAPAGTPMDKIVAAARATHVDRFVRTLPDGYDTVLDD
EGSNVSVGEKQLITIARAFLAEPAILVLDEATSSVDTRTEVLIQHAMAQLRTGRTSFVIAHRLSTIRDADVILVMENGAI
VEQGPHDALLAANGAYARLYAAQFAEPVA

Nucleotide


Download         Length: 2010 bp        

>NTDB_id=638481 SLV14_RS16455 WP_411577457.1 3844216..3846225(-) (rcrQ) [Streptomyces sp. Je 1-4]
GTGACCACCGCGGACAAGGGGGCGGCCCGCCGGGCCGAGGCCCCGGCAGCCACCGACGAGACACCGCAGCCCGCCACCCG
ACGAGGCCCGGCCCCGGCCGTCGGGCCCGCCCGGATGATGGGCGGCCAGCCCACCGAGAAGTCGATGGACTTCAAGGGCT
CCGGCAAACGGCTGCTGGCCCAGATGCGGCCGGAGCGAGGCATCATGAGCCTCGCCCTGGCCCTGGGCGCACTGAGCGTG
GCCCTGACGGTCGTCGGCCCCAAGGTCCTCGGCCACGCCACCGACCTGATCATGTCCGGCATCATCGGCCGGCAACTGCC
CGACGGGCTCACCAGGGCCCAGGCCGCCGGCCAACTCCGTGCCCACGGCCAGGACGGGCTCGCCGACATGATCGGCACGA
TGCCGGTCGTCCCCGGCCACGGCATCGACTTCGGTGCCGTCGGCCAGGTGCTGCTCTGGGTCACCCTGATCTACGCGGCC
GCCTCGCTGTTCGGCTTCGTCCAGGCCAGGATCGCCACCCGGGTGGTCCAGCGGGCCGTCTTCCGGATGCGCGAACAGGT
CGAGGAGAAGCTGGCCCGGCTGCCGCTGAGCTACTTCGACAAGCAGCAGCGCGGCGAGGTCCTCTCCCGGGCCACCAACG
ACATCGACAACATCCAGCAGACGCTCCAGCAGACCCTCAGCCAGATCGTCGCCTCGCTGCTGACCATCGTCGGCGTGCTC
GCCATGATGTTCTGGATCTCCCCGCTGCTGGCCCTGGTCGCCCTGATCACGGTCCCGGTCTCGGTCGTCGTCGCCACCAA
GGTCGGCAAGCGCGCCCAGCCGCAGTTCGTCCAGCAGTGGAAGACCACCGGCAAGCTCAACGCGCACATCGAGGAGATGT
ACACCGGCCACAGCCTGGTGAAGGTCTTCGGCCGGCAGCGCGAGTCCGCCGAACTCTTCCGCGAACAGAACGAGGCCCTC
TACGCCGCCGGGTTCAAGGCCCAGTTCATCTCCGGGATCATCCAGCCCGCGATGATGTTCATCGGCAACCTCAACTACGT
CCTGGTGGCGGTGGTCGGCGGCCTCCGCGTCGCCTCCGGGGCCCTCTCCATCGGCGACGTCCAGGCCTTCATCCAGTACT
CCCGGCAGTTCAGCCAGCCGCTCACCCAGGTCGCCTCGATGGCCAACCTCGTCCAGTCCGGCGTCGCCTCCGCCGAGCGG
GTCTTCGAACTCCTCGACGCCACGGAGCAGGACCCCGACCCCGTACGGCCGGCCCGCCCCGAACGCATCGAGGGCCGGGT
CGAGTTCGAGGACGTCTCCTTCCGCTACGCACCGGACAAGCCGCTCATCGAGGACCTCGCGCTGGCCGTCCACCCCGGCC
AGACGGTGGCGATCGTCGGCCCGACCGGCGCCGGCAAGACCACGCTCGTCAACCTCCTGATGCGCTTCTACGAGGTGAGC
GGCGGCCGGATCACCCTCGACGGCGTCGACATCGCCGCCATGTCCCGCGAGGAACTGCGCGCGCACATCGGCATGGTCCT
CCAGGACACCTGGCTCTTCGGCGGCACGATCGCCGAGAACATCGCCTACGGAGCCCCCGCGGGCACCCCGATGGACAAGA
TCGTGGCGGCGGCCAGGGCCACCCATGTCGACCGCTTCGTGCGGACCCTGCCGGACGGCTACGACACGGTGCTCGACGAC
GAGGGCAGCAATGTCTCCGTCGGCGAGAAACAGCTGATCACCATCGCCCGCGCCTTCCTCGCCGAACCGGCCATCCTCGT
CCTGGACGAGGCCACCAGCTCGGTCGACACCCGCACCGAGGTGCTCATCCAGCACGCGATGGCCCAGCTCCGCACCGGCC
GCACCAGCTTCGTCATCGCCCACCGCCTCTCCACGATCCGCGACGCGGACGTCATCCTCGTCATGGAAAACGGTGCGATC
GTGGAACAGGGGCCCCACGATGCGCTGTTGGCCGCCAATGGCGCGTACGCGCGTTTGTACGCGGCCCAGTTCGCGGAGCC
CGTGGCGTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(444-593)

ABC transporter transmembrane region (ABC_membrane)

(88-381)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

42.122

92.975

0.392