Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   SLV14_RS16050 Genome accession   NZ_CP106840
Coordinates   3760666..3761325 (+) Length   219 a.a.
NCBI ID   WP_208681544.1    Uniprot ID   -
Organism   Streptomyces sp. Je 1-4     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3755666..3766325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SLV14_RS16025 (SLV14_003214) - 3757386..3758000 (+) 615 WP_259670333.1 flavin reductase family protein -
  SLV14_RS16030 (SLV14_003215) arfB 3758022..3758450 (-) 429 WP_208681537.1 alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB -
  SLV14_RS16035 (SLV14_003216) - 3758653..3759228 (+) 576 WP_208681538.1 TerD family protein -
  SLV14_RS16040 (SLV14_003217) - 3759403..3759672 (-) 270 WP_208681540.1 helix-turn-helix domain-containing protein -
  SLV14_RS16045 (SLV14_003218) map 3759772..3760539 (+) 768 WP_263269784.1 type I methionyl aminopeptidase -
  SLV14_RS16050 (SLV14_003219) vraR 3760666..3761325 (+) 660 WP_208681544.1 response regulator Regulator
  SLV14_RS16055 (SLV14_003220) - 3761392..3761889 (+) 498 WP_093645067.1 hypothetical protein -
  SLV14_RS16060 (SLV14_003221) - 3762021..3762665 (-) 645 WP_263273174.1 pentapeptide repeat-containing protein -
  SLV14_RS16065 (SLV14_003222) - 3763035..3764048 (+) 1014 WP_263269787.1 zinc-binding dehydrogenase -
  SLV14_RS16070 (SLV14_003223) - 3764225..3765328 (-) 1104 WP_208687913.1 aminopeptidase P family protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 22840.19 Da        Isoelectric Point: 5.6130

>NTDB_id=638477 SLV14_RS16050 WP_208681544.1 3760666..3761325(+) (vraR) [Streptomyces sp. Je 1-4]
MSPYAAEPAHAPVGVLLCDDHAVVRAGLLALLSGAPGIEVIGEATSGEEAVALAAALRPDVVLMDLQLGSGIDGVEATRR
IARPDAPGSPHVLVLTDYDTDADIARALDAGAAGHLLKAERPEELFAAIRAAAEGHSTPAAPVAHRVLAQMRSPLPTLTD
RELDILRRLARGLSIREIARALATSEATVKTQLGLLYEKLGVNSRTAAVSVAREQRLVP

Nucleotide


Download         Length: 660 bp        

>NTDB_id=638477 SLV14_RS16050 WP_208681544.1 3760666..3761325(+) (vraR) [Streptomyces sp. Je 1-4]
ATGAGCCCATACGCCGCCGAACCCGCACACGCTCCTGTAGGCGTGCTGCTCTGCGACGACCATGCCGTCGTACGCGCGGG
GCTGCTCGCCCTGCTCAGCGGCGCCCCCGGCATCGAGGTCATCGGCGAGGCCACGAGCGGCGAGGAGGCCGTGGCCCTGG
CCGCCGCACTCCGGCCCGACGTCGTCCTGATGGACCTCCAGCTCGGCTCCGGTATCGACGGTGTCGAGGCCACCCGGCGC
ATCGCCCGCCCCGATGCCCCCGGCTCCCCCCATGTCCTCGTGCTGACCGACTACGACACCGACGCCGACATCGCCCGCGC
CCTCGACGCCGGCGCCGCGGGACATCTCCTCAAGGCCGAGCGGCCGGAGGAACTGTTCGCCGCGATCCGGGCCGCGGCCG
AGGGCCACAGCACGCCGGCCGCGCCGGTCGCCCATCGCGTCCTGGCCCAGATGCGCAGCCCGCTCCCCACCCTCACCGAC
CGGGAGCTCGACATCCTTCGCCGGCTCGCCCGCGGGCTGAGCATCCGCGAGATCGCCCGTGCGCTCGCCACCAGCGAGGC
CACGGTCAAAACGCAGCTGGGCCTGCTCTACGAAAAGCTCGGTGTGAACTCCCGGACCGCCGCGGTCTCCGTCGCCAGGG
AGCAGCGGCTGGTGCCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(15-130)

Bacterial regulatory proteins, luxR family (GerE)

(157-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.758

96.347

0.393