Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   LU294_RS26610 Genome accession   NZ_CP089743
Coordinates   5130875..5131159 (+) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus paranthracis strain SHOU-BC01     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 5125875..5136159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LU294_RS26595 (LU294_26595) rnmV 5126667..5127224 (-) 558 WP_000692826.1 ribonuclease M5 -
  LU294_RS26600 (LU294_26600) - 5127441..5128208 (-) 768 WP_000895831.1 TatD family hydrolase -
  LU294_RS26605 (LU294_26605) metG 5128375..5130357 (-) 1983 WP_000159679.1 methionine--tRNA ligase -
  LU294_RS26610 (LU294_26610) abrB 5130875..5131159 (+) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  LU294_RS26615 (LU294_26615) rsmI 5131180..5132055 (-) 876 WP_000267828.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  LU294_RS26620 (LU294_26620) - 5132024..5132314 (-) 291 WP_000414340.1 GIY-YIG nuclease family protein -
  LU294_RS26625 (LU294_26625) - 5132301..5133041 (-) 741 WP_001055351.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  LU294_RS26630 (LU294_26630) yabA 5133162..5133512 (-) 351 WP_000412054.1 DNA replication initiation control protein YabA -
  LU294_RS26635 (LU294_26635) - 5133527..5134354 (-) 828 WP_000272429.1 stage 0 sporulation family protein -
  LU294_RS26640 (LU294_26640) holB 5134360..5135343 (-) 984 WP_000978582.1 DNA polymerase III subunit delta' -
  LU294_RS26645 (LU294_26645) tmk 5135379..5136005 (-) 627 WP_000677229.1 dTMP kinase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=638465 LU294_RS26610 WP_000843036.1 5130875..5131159(+) (abrB) [Bacillus paranthracis strain SHOU-BC01]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=638465 LU294_RS26610 WP_000843036.1 5130875..5131159(+) (abrB) [Bacillus paranthracis strain SHOU-BC01]
ATGAAATCTACTGGTATCGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCGATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCTCTTGAAATCTATGTTGATGACGAGAAAATCATCTTAAAAAAATATAAGCCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAGCTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851