Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   LU294_RS19935 Genome accession   NZ_CP089743
Coordinates   3841171..3841494 (+) Length   107 a.a.
NCBI ID   WP_000578880.1    Uniprot ID   A0A2A7DD22
Organism   Bacillus paranthracis strain SHOU-BC01     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 3836171..3846494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LU294_RS19920 (LU294_19920) - 3836686..3838053 (-) 1368 WP_061131185.1 aldehyde dehydrogenase -
  LU294_RS19925 (LU294_19925) inhA1 3838225..3840615 (-) 2391 WP_109630912.1 M6 family metalloprotease immune inhibitor InhA1 -
  LU294_RS19930 (LU294_19930) - 3840957..3841091 (+) 135 WP_000276217.1 anti-repressor SinI family protein -
  LU294_RS19935 (LU294_19935) sinR 3841171..3841494 (+) 324 WP_000578880.1 helix-turn-helix domain-containing protein Regulator
  LU294_RS19940 (LU294_19940) calY 3841570..3842163 (-) 594 WP_061185640.1 biofilm matrix protein CalY -
  LU294_RS19945 (LU294_19945) - 3842587..3843426 (-) 840 WP_074542085.1 DUF4047 domain-containing protein -
  LU294_RS19950 (LU294_19950) - 3843587..3844174 (-) 588 WP_000172834.1 CalY family protein -
  LU294_RS19955 (LU294_19955) sipW 3844237..3844806 (-) 570 WP_087984786.1 signal peptidase I SipW -
  LU294_RS19960 (LU294_19960) - 3845001..3846287 (-) 1287 WP_109630909.1 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12386.21 Da        Isoelectric Point: 8.5614

>NTDB_id=638448 LU294_RS19935 WP_000578880.1 3841171..3841494(+) (sinR) [Bacillus paranthracis strain SHOU-BC01]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKENHLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQDQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=638448 LU294_RS19935 WP_000578880.1 3841171..3841494(+) (sinR) [Bacillus paranthracis strain SHOU-BC01]
ATGATTGGAGAACGTATAAAACGCCTGCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGTGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAAATTGCAGCAGTTC
TACAAATTCCAGTTGATACTCTACTTCATGATGAAACAACAAAGGAAAATCACTTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCCGGCGTCTCCAAAGAACAGTTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAGATCAAAA
ATAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(72-99)

Helix-turn-helix (HTH_3)

(6-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A7DD22

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692