Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   LU294_RS18605 Genome accession   NZ_CP089743
Coordinates   3597637..3598239 (+) Length   200 a.a.
NCBI ID   WP_109630958.1    Uniprot ID   -
Organism   Bacillus paranthracis strain SHOU-BC01     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3592637..3603239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LU294_RS18560 (LU294_18560) gpsB 3593029..3593367 (-) 339 WP_109630964.1 cell division regulator GpsB -
  LU294_RS18565 (LU294_18565) - 3593465..3594019 (-) 555 WP_109630961.1 DUF1273 domain-containing protein -
  LU294_RS18570 (LU294_18570) - 3594076..3594501 (-) 426 WP_000546265.1 CotD family spore coat protein -
  LU294_RS18575 (LU294_18575) - 3594656..3595126 (-) 471 WP_000487707.1 YppG family protein -
  LU294_RS18580 (LU294_18580) - 3595304..3595495 (+) 192 WP_000242664.1 YppF family protein -
  LU294_RS18585 (LU294_18585) - 3595520..3595864 (-) 345 WP_000872959.1 YppE family protein -
  LU294_RS18590 (LU294_18590) - 3595880..3596122 (-) 243 WP_001252039.1 hypothetical protein -
  LU294_RS18595 (LU294_18595) - 3596208..3596384 (+) 177 WP_001982922.1 hypothetical protein -
  LU294_RS18600 (LU294_18600) - 3596508..3597533 (-) 1026 WP_109631208.1 DUF2515 domain-containing protein -
  LU294_RS18605 (LU294_18605) recU 3597637..3598239 (+) 603 WP_109630958.1 Holliday junction resolvase RecU Machinery gene
  LU294_RS18610 (LU294_18610) - 3598305..3601013 (+) 2709 WP_001283134.1 PBP1A family penicillin-binding protein -
  LU294_RS18615 (LU294_18615) - 3601037..3601555 (-) 519 WP_000442682.1 YpoC family protein -
  LU294_RS18620 (LU294_18620) nth 3601559..3602206 (-) 648 WP_000933025.1 endonuclease III -
  LU294_RS18625 (LU294_18625) dnaD 3602222..3602929 (-) 708 WP_000728540.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23356.64 Da        Isoelectric Point: 9.4277

>NTDB_id=638446 LU294_RS18605 WP_109630958.1 3597637..3598239(+) (recU) [Bacillus paranthracis strain SHOU-BC01]
MTIRYPNGKRYNQASQPHKTPIKKHTYSNRGMSLEEELNETNEYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVIAHNGIAFIIIKFTLFDELYLLDAKHIIAFWNRQ
NTGGRKSITKEEIEEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=638446 LU294_RS18605 WP_109630958.1 3597637..3598239(+) (recU) [Bacillus paranthracis strain SHOU-BC01]
ATGACCATTCGTTACCCAAATGGAAAACGGTACAATCAAGCTTCACAACCTCATAAAACACCAATTAAAAAACATACTTA
CAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACGAATGAATATTACTTAACCCATAATATTGCATGCGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTGGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATATAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACAAAAAATAA
AACGAGTTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAGCATATGAAGCAAGTAATCGCTCATAATGGAATTGCAT
TTATTATTATTAAATTTACACTTTTTGATGAACTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACAGGTGGAAGAAAATCGATTACGAAAGAAGAAATAGAAGAGCATGGATCCTTATTATCATGCGGTTATCACCCTCG
GATTGATTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

62.5

100

0.625