Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   LU294_RS16640 Genome accession   NZ_CP089743
Coordinates   3197530..3197817 (-) Length   95 a.a.
NCBI ID   WP_000648330.1    Uniprot ID   A0AAE9P9A9
Organism   Bacillus paranthracis strain SHOU-BC01     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3192530..3202817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LU294_RS16610 (LU294_16610) - 3192844..3193191 (+) 348 WP_000426313.1 DUF4257 domain-containing protein -
  LU294_RS16615 (LU294_16615) - 3193276..3193500 (+) 225 WP_000162601.1 hypothetical protein -
  LU294_RS16620 (LU294_16620) - 3193687..3194862 (-) 1176 WP_000832291.1 MFS transporter -
  LU294_RS16625 (LU294_16625) - 3194912..3195848 (-) 937 Protein_3304 aldo/keto reductase -
  LU294_RS16630 (LU294_16630) - 3195956..3196264 (+) 309 WP_109629414.1 ArsR/SmtB family transcription factor -
  LU294_RS16635 (LU294_16635) - 3196305..3197255 (-) 951 WP_001089047.1 serine protease -
  LU294_RS16640 (LU294_16640) abrB 3197530..3197817 (-) 288 WP_000648330.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  LU294_RS16645 (LU294_16645) - 3197934..3199814 (-) 1881 WP_109629411.1 ABC transporter permease -
  LU294_RS16650 (LU294_16650) nadE 3200086..3200904 (+) 819 WP_000174879.1 ammonia-dependent NAD(+) synthetase -
  LU294_RS16655 (LU294_16655) - 3200953..3201414 (-) 462 WP_000035006.1 NUDIX hydrolase -
  LU294_RS16660 (LU294_16660) - 3201446..3201643 (-) 198 WP_001048096.1 DUF4083 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10617.34 Da        Isoelectric Point: 6.3179

>NTDB_id=638445 LU294_RS16640 WP_000648330.1 3197530..3197817(-) (abrB) [Bacillus paranthracis strain SHOU-BC01]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLANGNITVSIDGAK
YLIKEIEKFLNKSEA

Nucleotide


Download         Length: 288 bp        

>NTDB_id=638445 LU294_RS16640 WP_000648330.1 3197530..3197817(-) (abrB) [Bacillus paranthracis strain SHOU-BC01]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTAATTCCTAAAGAATTACGTGATGTATTGGG
AATACAAATTAAATCACCGCTTGAAATTTTCGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAAATCAAAACATATCATTAGCAAATGGAAACATTACTGTTAGTATAGATGGAGCGAAA
TATTTAATAAAAGAAATAGAGAAGTTTTTAAACAAGAGTGAGGCTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.444

94.737

0.516