Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   LU294_RS07440 Genome accession   NZ_CP089743
Coordinates   1403264..1403698 (+) Length   144 a.a.
NCBI ID   WP_000811499.1    Uniprot ID   A0A1J9ZQC5
Organism   Bacillus paranthracis strain SHOU-BC01     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1398264..1408698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LU294_RS07420 (LU294_07420) - 1399153..1400316 (-) 1164 WP_000434564.1 aminotransferase A -
  LU294_RS07425 (LU294_07425) - 1400440..1400640 (-) 201 WP_000929285.1 hypothetical protein -
  LU294_RS07430 (LU294_07430) kinB 1400950..1402224 (+) 1275 WP_000420384.1 sporulation sensor histidine kinase KinB -
  LU294_RS07435 (LU294_07435) - 1402278..1403027 (-) 750 WP_000388462.1 DUF3967 domain-containing protein -
  LU294_RS07440 (LU294_07440) nucA/comI 1403264..1403698 (+) 435 WP_000811499.1 DNA-entry nuclease Machinery gene
  LU294_RS07445 (LU294_07445) comJ 1403735..1404124 (+) 390 WP_000424017.1 competence protein ComJ -
  LU294_RS07450 (LU294_07450) metE 1404162..1406450 (-) 2289 WP_001007596.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  LU294_RS07455 (LU294_07455) - 1407118..1407675 (-) 558 WP_074531989.1 PadR family transcriptional regulator -
  LU294_RS07460 (LU294_07460) - 1407835..1408623 (-) 789 WP_074531993.1 RNA-guided endonuclease TnpB family protein -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15996.35 Da        Isoelectric Point: 8.4331

>NTDB_id=638438 LU294_RS07440 WP_000811499.1 1403264..1403698(+) (nucA/comI) [Bacillus paranthracis strain SHOU-BC01]
MKQLKGIIISIIAILSIVVAVYEVLVPEETSIKKTNAYDQVLEFPKDRYPETGKHITDAIKEGHSEVCTIDRGGAADRRK
LSLAPYPSKKGYDRDEWPMAMCKEGGKGAHIEYISPADNRGAGSWVGNKLDKYPDGTRVKFDVK

Nucleotide


Download         Length: 435 bp        

>NTDB_id=638438 LU294_RS07440 WP_000811499.1 1403264..1403698(+) (nucA/comI) [Bacillus paranthracis strain SHOU-BC01]
ATGAAGCAATTAAAAGGTATTATCATTTCAATTATTGCAATTCTTTCTATTGTAGTAGCGGTGTATGAAGTGCTTGTTCC
AGAGGAAACAAGTATTAAAAAAACAAATGCGTATGATCAAGTTCTAGAATTTCCGAAAGATCGATACCCAGAGACAGGGA
AACATATTACGGATGCTATAAAAGAAGGGCATTCAGAAGTGTGTACAATCGACCGTGGTGGCGCTGCGGATAGAAGAAAA
TTATCGTTAGCTCCATACCCATCAAAAAAAGGGTATGATCGTGATGAATGGCCAATGGCGATGTGTAAAGAAGGCGGAAA
AGGAGCGCACATCGAATATATAAGTCCAGCAGATAATCGCGGAGCAGGCTCTTGGGTAGGAAATAAGTTAGATAAATACC
CAGATGGTACGCGTGTAAAATTTGACGTAAAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1J9ZQC5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

72.072

77.083

0.556