Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   LU294_RS06155 Genome accession   NZ_CP089743
Coordinates   1184799..1185842 (+) Length   347 a.a.
NCBI ID   WP_001013206.1    Uniprot ID   -
Organism   Bacillus paranthracis strain SHOU-BC01     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1179799..1190842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LU294_RS06120 (LU294_06120) - 1180054..1180542 (+) 489 WP_000764271.1 hypothetical protein -
  LU294_RS06125 (LU294_06125) - 1180579..1180890 (-) 312 WP_001093243.1 hypothetical protein -
  LU294_RS06130 (LU294_06130) - 1181144..1181359 (+) 216 WP_001008331.1 DUF3912 family protein -
  LU294_RS06135 (LU294_06135) - 1181447..1181854 (+) 408 WP_000877912.1 hypothetical protein -
  LU294_RS06140 (LU294_06140) - 1182029..1183423 (-) 1395 WP_001094339.1 L-cystine transporter -
  LU294_RS06145 (LU294_06145) - 1183531..1183773 (-) 243 WP_000440714.1 DUF2626 domain-containing protein -
  LU294_RS06150 (LU294_06150) - 1183898..1184593 (-) 696 WP_000434103.1 helix-turn-helix transcriptional regulator -
  LU294_RS06155 (LU294_06155) comGA 1184799..1185842 (+) 1044 WP_001013206.1 competence protein ComGA Machinery gene
  LU294_RS06160 (LU294_06160) comGB 1185835..1186866 (+) 1032 WP_109630167.1 competence type IV pilus assembly protein ComGB -
  LU294_RS06165 (LU294_06165) comGC 1186878..1187177 (+) 300 WP_001178694.1 competence type IV pilus major pilin ComGC -
  LU294_RS06170 (LU294_06170) comGD 1187174..1187629 (+) 456 WP_000810389.1 comG operon protein ComGD -
  LU294_RS06175 (LU294_06175) comGE 1187622..1187924 (+) 303 WP_000829518.1 competence type IV pilus minor pilin ComGE -
  LU294_RS06180 (LU294_06180) comGF 1187894..1188364 (+) 471 WP_000923058.1 competence type IV pilus minor pilin ComGF -
  LU294_RS06185 (LU294_06185) comGG 1188361..1188732 (+) 372 WP_000595196.1 competence type IV pilus minor pilin ComGG -
  LU294_RS06190 (LU294_06190) - 1188911..1189561 (+) 651 WP_000183886.1 2OG-Fe(II) oxygenase -
  LU294_RS06195 (LU294_06195) aroK 1189681..1190178 (+) 498 WP_000836628.1 shikimate kinase AroK -
  LU294_RS06200 (LU294_06200) - 1190217..1190417 (+) 201 WP_000106079.1 YqzE family protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 39361.84 Da        Isoelectric Point: 9.1826

>NTDB_id=638435 LU294_RS06155 WP_001013206.1 1184799..1185842(+) (comGA) [Bacillus paranthracis strain SHOU-BC01]
MNGIESFANTILKEACRVQASDLHIVPRKKDVVIQLRIGKDLMTKQYIEKEFGEKLVSHFKFLASMDIGERRKPQNGSLY
LQMDGQEVYLRLSTLPTVYQESLVIRLHLQASIQPLSHLSLFPSTAKKLLSFLHYSHGLLVFTGPTGSGKTTTMYALLEV
IRKKKTRRIVTLEDPVEKRNDDVLQIQINEKAGITYEAGLKAILRHDPDVILVGEIRDEETAKIAIRASLTGHLVMTTLH
TNDAKGAILRFMDFGITRQEIEQSLLAIAAQRLVELKCPFCKRKCSTVCKSMRQVRQASIYELLYGYELKQAIKEANGEC
VTYKHETLESSLRKGYALGFLEEDVYV

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=638435 LU294_RS06155 WP_001013206.1 1184799..1185842(+) (comGA) [Bacillus paranthracis strain SHOU-BC01]
ATGAATGGAATTGAAAGCTTTGCGAATACGATTTTGAAAGAGGCGTGTAGGGTACAAGCTTCGGATTTACATATTGTGCC
CCGGAAGAAGGATGTAGTGATTCAACTGCGCATAGGGAAAGATTTAATGACGAAACAATACATTGAAAAGGAATTTGGAG
AAAAACTTGTTTCACACTTTAAATTTTTAGCATCCATGGATATAGGGGAGAGGCGGAAGCCACAAAATGGTTCACTGTAT
TTACAAATGGATGGACAGGAAGTGTATTTACGTCTTTCCACGCTTCCAACTGTATATCAAGAAAGTCTCGTTATTCGTCT
TCATTTACAAGCATCTATTCAGCCGTTATCTCATCTTTCGTTATTTCCAAGTACAGCGAAGAAACTACTTTCTTTTTTAC
ATTATTCCCATGGGTTACTCGTATTTACTGGACCGACTGGATCGGGGAAGACAACAACAATGTATGCATTATTAGAGGTA
ATTAGAAAAAAGAAAACACGCCGCATCGTTACACTGGAAGATCCAGTTGAAAAAAGAAATGACGATGTACTACAAATTCA
AATAAATGAAAAAGCAGGTATCACATATGAGGCGGGACTAAAGGCTATTTTGCGTCATGATCCAGATGTTATTTTAGTGG
GTGAAATTCGTGATGAAGAAACAGCAAAAATCGCTATAAGAGCAAGTTTGACTGGCCATTTAGTAATGACGACACTGCAT
ACGAATGATGCGAAAGGAGCAATACTTCGGTTTATGGACTTTGGCATAACAAGGCAAGAGATTGAACAATCTTTATTGGC
TATAGCTGCACAGCGACTTGTTGAATTGAAGTGTCCGTTTTGTAAAAGAAAGTGCTCAACTGTATGTAAATCAATGAGGC
AAGTAAGGCAAGCGAGTATTTATGAGTTGTTATATGGATATGAGTTAAAACAAGCGATTAAAGAAGCAAACGGGGAATGT
GTCACGTACAAGCATGAGACATTAGAGTCTTCGTTGCGAAAAGGATACGCTTTAGGATTTTTAGAAGAGGATGTTTATGT
TTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

58.501

100

0.585
  pilB Vibrio campbellii strain DS40M4

35.977

100

0.366