Detailed information NTG0638424

Bioinformatically predicted

Overview

• Name: comFA
• Type: Machinery gene
• Locus tag: LU294_RS01510
• Genome accession: NZ_CP089743
• Coordinates: 318264..319613 (+)
• Length: 449 a.a.
• NCBI ID: WP_101218669.1
• Uniprot ID: -
• Organism: Bacillus paranthracis strain SHOU-BC01
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 313264..324613

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LU294_RS01490 (LU294_01490)	-	314339..314974 (-)	636	WP_000926683.1	YigZ family protein	-
LU294_RS01495 (LU294_01495)	-	315214..316056 (+)	843	WP_000844764.1	DegV family protein	-
LU294_RS01500 (LU294_01500)	-	316230..316544 (+)	315	WP_000400857.1	winged helix-turn-helix transcriptional regulator	-
LU294_RS01505 (LU294_01505)	-	316692..318137 (+)	1446	WP_000499501.1	NlpC/P60 family protein	-
LU294_RS01510 (LU294_01510)	comFA	318264..319613 (+)	1350	WP_101218669.1	ATP-dependent helicase ComFA	Machinery gene
LU294_RS01515 (LU294_01515)	-	319613..320317 (+)	705	WP_101218671.1	ComF family protein	-
LU294_RS01520 (LU294_01520)	cspC	320444..320641 (+)	198	WP_001162041.1	cold shock protein CspC	-
LU294_RS01525 (LU294_01525)	hpf	320965..321507 (+)	543	WP_000671190.1	ribosome hibernation-promoting factor, HPF/YfiA family	-
LU294_RS01530 (LU294_01530)	secA	321783..324290 (+)	2508	WP_000579381.1	preprotein translocase subunit SecA	-

Sequence

Protein

• Length: 449 a.a.
• Molecular weight: 51027.53 Da
• Isoelectric Point: 9.7356

>NTDB_id=638424 LU294_RS01510 WP_101218669.1 318264..319613(+) (comFA) [Bacillus paranthracis strain SHOU-BC01]
MLAGKQLLLEELSSDLRRELSDLKKKGEVVCVQGITKNTSKYICQRCGNIEQRLFASFLCKRCGKACAYCRKCITMGRVS
ECTVLVRGIHERNGDRELNPLQWNGALSIGQELAAQGVIEAIKQKESFFIWAVCGAGKTEMLFYGIEEALQKGERVCIAT
PRTDVVLELAPRLQEVFPSITVAALYGGSVDHKKDAALVVATTHQLLRYYRAFHVMIVDEIDAFPYHADQMLQYAVRQAM
KEKAARIYLTATPDEKWKRNFRKGKQKGVIVSGRYHRHPLPVPLFSWCGNWKKSLHHKKIPRVLLQWLKMNLNKKYPIFL
FVPHVRYIEEISQLLKGLDNRIDGVHAEDSMRKEKVASFRKGDIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSFEEPYGEVMYFHYGKTEAMVRAKKHIQSMNKNAKEQGLID

Nucleotide

• Length: 1350 bp

>NTDB_id=638424 LU294_RS01510 WP_101218669.1 318264..319613(+) (comFA) [Bacillus paranthracis strain SHOU-BC01]
ATGCTTGCTGGAAAACAGTTGCTATTAGAAGAACTCTCTTCAGATTTACGGAGAGAATTAAGTGATTTGAAAAAGAAGGG
AGAGGTTGTATGTGTACAAGGTATAACAAAGAATACTTCTAAATATATATGTCAGCGCTGCGGAAATATAGAGCAGCGGC
TATTTGCATCATTTTTATGTAAAAGGTGCGGTAAAGCATGTGCGTATTGCCGGAAGTGTATCACGATGGGGAGAGTTAGC
GAATGTACTGTACTTGTTCGCGGGATTCATGAAAGAAACGGAGACAGGGAGCTAAATCCATTACAGTGGAATGGGGCTTT
ATCGATTGGTCAGGAGTTGGCGGCGCAAGGAGTTATAGAAGCGATTAAGCAGAAAGAATCTTTTTTTATTTGGGCTGTGT
GCGGGGCTGGAAAAACAGAAATGTTATTTTACGGTATAGAAGAGGCGCTCCAAAAAGGAGAAAGAGTTTGTATCGCAACG
CCAAGGACTGACGTTGTACTGGAATTAGCGCCGAGATTACAAGAAGTGTTTCCAAGTATAACTGTAGCTGCTTTATACGG
AGGGAGTGTAGATCATAAAAAAGATGCAGCGTTAGTCGTTGCAACGACTCACCAACTGTTACGTTACTATAGAGCGTTTC
ATGTGATGATTGTAGATGAGATTGATGCCTTCCCGTATCATGCAGATCAAATGTTACAGTATGCAGTTAGGCAAGCAATG
AAAGAGAAAGCAGCGCGTATTTATTTAACTGCAACCCCTGATGAAAAGTGGAAGCGTAATTTCAGAAAGGGGAAACAAAA
AGGTGTTATTGTGTCAGGACGATACCATCGTCACCCGTTACCAGTTCCTCTATTTAGTTGGTGCGGAAATTGGAAGAAAA
GCCTCCACCATAAAAAAATTCCTCGCGTGTTACTACAATGGTTAAAAATGAACTTAAACAAAAAGTATCCTATTTTTTTA
TTTGTTCCTCATGTGCGATATATAGAAGAAATAAGTCAGTTGTTGAAAGGGTTGGATAATAGAATCGATGGCGTGCATGC
AGAAGATTCGATGAGAAAAGAAAAAGTAGCATCTTTCAGAAAGGGAGACATTCCGTTATTAGTTACAACGACAATTTTAG
AAAGAGGAGTAACTGTGAAGAACTTACAAGTGGCTGTGTTAGGAGCTGAAGAAGAAATTTTTTCAGAGAGTGCGCTCGTA
CAAATTGCAGGCCGAGCGGGGCGTAGTTTTGAAGAGCCATATGGTGAGGTTATGTATTTTCATTACGGTAAGACAGAGGC
AATGGTACGCGCGAAAAAACATATTCAAAGTATGAACAAAAATGCGAAAGAACAAGGATTGATCGATTAA

Domains

Predicted by InterproScan.

• Type III restriction enzyme, res subunit (ResIII) (110-254)

• Helicase conserved C-terminal domain (Helicase_C) (311-408)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA	Bacillus subtilis subsp. subtilis str. 168	52.632	93.096	0.49
comFA	Latilactobacillus sakei subsp. sakei 23K	40	90.2	0.361