Detailed information NTG0638369

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: LUM42_RS14670
• Genome accession: NZ_CP089603
• Coordinates: 3137022..3138029 (-)
• Length: 335 a.a.
• NCBI ID: WP_004728525.1
• Uniprot ID: -
• Organism: Vibrio furnissii strain VFN3
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 3132022..3143029

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LUM42_RS14645 (LUM42_14645)	rraA	3132654..3133190 (-)	537	WP_004728530.1	ribonuclease E activity regulator RraA	-
LUM42_RS14650 (LUM42_14650)	-	3133266..3134183 (-)	918	WP_014204315.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
LUM42_RS14655 (LUM42_14655)	hslU	3134277..3135608 (-)	1332	WP_004728528.1	HslU--HslV peptidase ATPase subunit	-
LUM42_RS14660 (LUM42_14660)	hslV	3135645..3136202 (-)	558	WP_014204312.1	ATP-dependent protease subunit HslV	-
LUM42_RS14665 (LUM42_14665)	-	3136341..3136892 (-)	552	WP_038152602.1	SPOR domain-containing protein	-
LUM42_RS14670 (LUM42_14670)	cytR	3137022..3138029 (-)	1008	WP_004728525.1	DNA-binding transcriptional regulator CytR	Regulator
LUM42_RS14675 (LUM42_14675)	priA	3138337..3140538 (-)	2202	WP_232658232.1	primosomal protein N'	-
LUM42_RS14680 (LUM42_14680)	rpmE	3140785..3141003 (+)	219	WP_004728523.1	50S ribosomal protein L31	-
LUM42_RS14685 (LUM42_14685)	-	3141214..3142488 (+)	1275	WP_014204309.1	malic enzyme-like NAD(P)-binding protein	-
LUM42_RS14690 (LUM42_14690)	metJ	3142565..3142882 (-)	318	WP_004728521.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36886.40 Da
• Isoelectric Point: 6.3510

>NTDB_id=638369 LUM42_RS14670 WP_004728525.1 3137022..3138029(-) (cytR) [Vibrio furnissii strain VFN3]
MATMKDVAQLAGVSTATVSRALMNPEKVSASTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYYTEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQMGHKRIAQIAGPEAAVLCQFRQQGYQQALRRAGISRNPTYSTIGDFTFESGAKAVRQLMALPEPPTA
IFCHNDTMAIGAIQEAKRLGMRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLD
TQLVIRESAAPPRSA

Nucleotide

• Length: 1008 bp

>NTDB_id=638369 LUM42_RS14670 WP_004728525.1 3137022..3138029(-) (cytR) [Vibrio furnissii strain VFN3]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCAGGCGTATCGACGGCGACAGTCTCGCGCGCTCTGATGAATCCCGAGAA
AGTTTCAGCCTCAACCCGTAAACGGGTTGAAGAGGCGGTTTTAGAAGCTGGCTATTCACCGAATTCTTTAGCCCGAAATC
TGCGTCGCAATGAATCGAAAACCATTGTCGCGATCGTGCCGGACATCTGTGATCCTTATTACACCGAAATTATTCGTGGT
ATCGAAGACGCCGCGATGGAACACGGTTATCTGGTACTGCTGGGTGACAGCGGTCAGCAGAAAAAACGTGAAAGCTCATT
TGTGAACTTGGTATTTACCAAACAGGCGGACGGTATGCTATTGCTGGGGACCGATTTGCCGTTTGACGTGAGCAAACCTG
AGCAGAAAAACCTACCACCGATGGTGATGGCGTGTGAGTTTGCGCCAGAACTTGAATTACCGACGGTGCATATCGATAAC
CTGACATCTGCCTTTGAAGCGGTGAACTATCTGACGCAGATGGGGCACAAACGCATCGCGCAGATTGCCGGCCCTGAAGC
GGCGGTGTTGTGTCAGTTCCGTCAGCAAGGGTATCAACAAGCCCTGCGCCGCGCGGGGATTTCACGCAATCCAACCTACA
GTACCATCGGTGACTTTACGTTTGAGTCGGGTGCCAAAGCGGTGCGCCAATTGATGGCCCTGCCGGAGCCGCCGACAGCC
ATTTTCTGTCACAACGATACCATGGCGATTGGTGCCATTCAGGAAGCCAAGCGTTTGGGCATGCGTGTGCCGCAAGACCT
GTCTGTGGTCGGCTTTGATGACATTCAGTTTGCGCAGTACTGCGATCCACCGCTAACCACCATTTCTCAGCCGCGTTACG
AGATCGGCCGTCAGGCGATGTTGATGATGCTTGAGTTACTGCGGGGTCATGATGTGCGTGCGGGCTCGCGTCTGCTCGAC
ACCCAATTGGTCATTCGCGAGAGTGCAGCGCCGCCCCGCTCGGCCTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	93.373	99.104	0.925
cytR	Vibrio parahaemolyticus RIMD 2210633	90.149	100	0.901