Detailed information NTG0638368

Bioinformatically predicted

Overview

• Name: pilM
• Type: Machinery gene
• Locus tag: LUM42_RS14470
• Genome accession: NZ_CP089603
• Coordinates: 3095485..3096489 (-)
• Length: 334 a.a.
• NCBI ID: WP_232658226.1
• Uniprot ID: -
• Organism: Vibrio furnissii strain VFN3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3090485..3101489

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LUM42_RS14445 (LUM42_14445)	aroK	3091365..3091883 (-)	519	WP_004728569.1	shikimate kinase AroK	-
LUM42_RS14450 (LUM42_14450)	pilQ	3092071..3093795 (-)	1725	WP_004728568.1	type IV pilus secretin PilQ	Machinery gene
LUM42_RS14455 (LUM42_14455)	pilP	3093820..3094332 (-)	513	WP_232658223.1	pilus assembly protein PilP	Machinery gene
LUM42_RS14460 (LUM42_14460)	pilO	3094322..3094912 (-)	591	WP_232658224.1	type 4a pilus biogenesis protein PilO	Machinery gene
LUM42_RS14465 (LUM42_14465)	pilN	3094905..3095495 (-)	591	WP_232658225.1	PilN domain-containing protein	Machinery gene
LUM42_RS14470 (LUM42_14470)	pilM	3095485..3096489 (-)	1005	WP_232658226.1	type IV pilus assembly protein PilM	Machinery gene
LUM42_RS14475 (LUM42_14475)	-	3096634..3099114 (+)	2481	WP_232658227.1	penicillin-binding protein 1A	-
LUM42_RS14480 (LUM42_14480)	oxyR	3099201..3100097 (-)	897	WP_014204332.1	DNA-binding transcriptional regulator OxyR	-
LUM42_RS14485 (LUM42_14485)	-	3100241..3100975 (+)	735	WP_004728561.1	glutathione peroxidase	-
LUM42_RS14490 (LUM42_14490)	-	3101099..3101362 (+)	264	WP_004728560.1	DUF3624 domain-containing protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 36949.22 Da
• Isoelectric Point: 6.5009

>NTDB_id=638368 LUM42_RS14470 WP_232658226.1 3095485..3096489(-) (pilM) [Vibrio furnissii strain VFN3]
MGKSLVTGVDIGHHSIKAVVLKPKGESYSLVGYQEIVVSDDIFADNHTLDYQKIVKKLKELKKELPLFSRKVALAVPDNA
VISKVLQIDSDLDASEQEFAVYQAFSHQSPFPIDDLSLDFVPSGDNPAGRSTNTLYQVYATRREVVDNRLSVASKAGFEP
LLLDVQVHGLLQIWQWVSRAQQRDDWMLVDVGLTQTTLCMDFADKAPFYKDIPLGTRQWHADPTPHPVPLSEPPMAGVNE
LVERIARQVQLLLSLQGHQALGGIWLSGGGATTEGLSAALAARLNLPCELFHPLTGFVTRRRMRARVPDDLQRFSTAAGL
ALRGLNWLERDHGA

Nucleotide

• Length: 1005 bp

>NTDB_id=638368 LUM42_RS14470 WP_232658226.1 3095485..3096489(-) (pilM) [Vibrio furnissii strain VFN3]
ATGGGTAAATCATTAGTTACAGGTGTCGATATCGGCCACCACAGTATTAAAGCGGTGGTTTTAAAACCGAAGGGCGAATC
GTATTCGCTGGTCGGCTACCAAGAAATAGTCGTATCCGACGATATTTTCGCTGATAACCACACGCTGGATTATCAGAAAA
TTGTAAAGAAACTCAAAGAACTAAAAAAGGAATTACCGTTATTTAGTCGCAAAGTTGCGCTGGCTGTGCCGGATAATGCG
GTAATAAGTAAGGTATTACAGATAGATAGCGATTTAGATGCCAGCGAACAAGAATTTGCTGTCTATCAGGCGTTTTCCCA
TCAATCGCCGTTTCCCATCGATGATCTGAGTTTGGATTTCGTACCAAGCGGCGATAACCCCGCCGGGCGCAGCACCAACA
CCCTGTATCAAGTGTACGCCACGCGACGTGAAGTCGTCGATAACCGGTTATCGGTGGCGAGCAAAGCGGGCTTTGAGCCG
CTGCTGCTCGATGTGCAGGTGCATGGGTTGCTCCAGATTTGGCAATGGGTGAGTCGCGCGCAGCAGCGCGACGATTGGAT
GCTGGTGGACGTCGGGCTGACGCAAACCACGTTATGCATGGATTTCGCCGATAAAGCGCCCTTCTATAAAGACATTCCGC
TGGGAACGCGTCAATGGCATGCCGACCCCACGCCCCATCCTGTGCCGCTGAGCGAGCCACCGATGGCTGGAGTCAATGAG
CTAGTTGAGCGAATTGCGCGCCAAGTGCAACTGCTGTTGTCCTTGCAGGGCCATCAAGCGCTGGGCGGGATTTGGCTGTC
GGGCGGTGGGGCGACGACGGAAGGCCTCAGCGCGGCTTTGGCTGCGCGACTGAATCTGCCGTGTGAACTGTTTCATCCAC
TGACGGGATTTGTGACGCGCCGCCGCATGCGAGCGCGTGTACCAGACGATCTGCAACGCTTTAGTACGGCGGCTGGCTTG
GCGCTGCGCGGGCTCAACTGGTTGGAGCGTGACCATGGTGCATGA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (239-324)

• Type IV pilus assembly protein PilM; (PilM_2) (8-218)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilM	Vibrio cholerae strain A1552	64.012	100	0.65
pilM	Vibrio campbellii strain DS40M4	45.562	100	0.461