Detailed information NTG0638356

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: LUM42_RS06445
• Genome accession: NZ_CP089603
• Coordinates: 1384723..1386144 (-)
• Length: 473 a.a.
• NCBI ID: WP_232658670.1
• Uniprot ID: -
• Organism: Vibrio furnissii strain VFN3
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1379723..1391144

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LUM42_RS06430 (LUM42_06430)	cdd	1382541..1383428 (-)	888	WP_004726199.1	cytidine deaminase	-
LUM42_RS06435 (LUM42_06435)	-	1383637..1384317 (-)	681	WP_014205225.1	LrgB family protein	-
LUM42_RS06440 (LUM42_06440)	-	1384308..1384682 (-)	375	WP_004726196.1	CidA/LrgA family protein	-
LUM42_RS06445 (LUM42_06445)	sbcB	1384723..1386144 (-)	1422	WP_232658670.1	exodeoxyribonuclease I	Machinery gene
LUM42_RS06450 (LUM42_06450)	-	1386308..1386460 (-)	153	Protein_1222	cation:dicarboxylate symporter family transporter	-
LUM42_RS06455 (LUM42_06455)	-	1386589..1387902 (-)	1314	WP_232658671.1	alpha/beta hydrolase	-
LUM42_RS06460 (LUM42_06460)	-	1388198..1389127 (+)	930	WP_232658672.1	hypothetical protein	-
LUM42_RS06465 (LUM42_06465)	-	1389448..1389660 (+)	213	WP_232658673.1	hypothetical protein	-
LUM42_RS06470 (LUM42_06470)	-	1389739..1391124 (-)	1386	WP_004726194.1	L-cystine transporter	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 54358.74 Da
• Isoelectric Point: 4.8928

>NTDB_id=638356 LUM42_RS06445 WP_232658670.1 1384723..1386144(-) (sbcB) [Vibrio furnissii strain VFN3]
MQQQQPTYFFFDYETWGTSPAKDRPSQFAGVRTDMEFNIIGEPLVIYCQLPSDYLPAPEAALITGIIPQKAMAQGLPEPE
FIAKIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYAWSWQNGNSRWDLLDVMRACHALRPEGVVWPENDEGFTS
FKLEHLSKANGIEHENAHDAMADVIATIELAKKVKAAQPKLFEYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQYT
SWIVPIAWHPTNQNAVIVVDLAKDPQPLLDLDVESLHARLYTRHDDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAAT
IGIDRELCLANLARIRQSPDIREKLAALFSIEREFEASNDVDTQLYDGFFSPADKAAMEIIRSTNPELLGELDITFSDKR
IEPLLFRYRARNFPWTLDDEEQRRWANHCRDYYETHLPDYMLNLENLVHEHESDEKKIAILKSVYQYVEKLAS

Nucleotide

• Length: 1422 bp

>NTDB_id=638356 LUM42_RS06445 WP_232658670.1 1384723..1386144(-) (sbcB) [Vibrio furnissii strain VFN3]
ATGCAGCAACAGCAGCCCACTTATTTCTTCTTTGACTATGAGACGTGGGGCACCAGCCCGGCCAAAGACCGTCCGAGTCA
GTTTGCTGGTGTGCGCACAGACATGGAGTTCAATATCATCGGTGAGCCGTTGGTGATTTACTGCCAATTGCCATCGGATT
ACCTGCCGGCGCCAGAAGCCGCGCTGATTACTGGCATCATTCCGCAAAAAGCGATGGCGCAAGGGCTGCCTGAGCCCGAA
TTCATCGCCAAGATTCACGCCGAGTTATCGACACCAAACACCACAAGCCTTGGGTACAACAGCATTCGCTTTGACGATGA
AGTCACCCGCTATACCTGTTATCGCAACTTCCTTGATCCGTATGCTTGGAGCTGGCAAAACGGCAACTCCCGCTGGGATT
TACTGGATGTGATGCGTGCATGTCACGCGTTGCGCCCGGAAGGTGTGGTGTGGCCAGAAAACGACGAAGGGTTTACCAGC
TTCAAACTGGAGCATTTGTCAAAAGCCAACGGCATTGAGCACGAAAATGCACACGATGCGATGGCCGATGTGATTGCGAC
GATTGAACTGGCGAAAAAAGTCAAAGCAGCGCAACCCAAGCTGTTTGAGTATTTCTTCTCGATGCGTCATAAACGCAAGC
TCAATGAGCTGATTGATATTGTCAACATGACGCCGCTGATGCATGTCTCTGGCATGCTGGGCCGTGAATGCCAATACACC
AGTTGGATTGTACCGATTGCTTGGCACCCGACCAACCAAAACGCGGTCATTGTGGTGGATTTAGCCAAAGACCCGCAGCC
GCTGCTCGATTTGGATGTGGAATCACTGCACGCGCGTTTATACACTCGTCATGACGATTTAGCGCCGGATGAATTGCCTG
TGCCCGTCAAGCTGGTTCATCTCAACAAGTGTCCGATTCTGGCTCCAGCAAAAACGCTCACCGCCGAAAATGCCGCCACC
ATCGGCATCGACCGCGAACTGTGCTTGGCCAACTTGGCACGCATTCGTCAGTCTCCCGATATTCGCGAAAAACTGGCGGC
GCTGTTTAGCATTGAGCGCGAATTTGAAGCCTCGAACGATGTGGATACGCAGCTCTATGACGGGTTCTTCTCCCCTGCAG
ATAAAGCTGCGATGGAAATTATTCGTTCCACGAATCCTGAACTGCTCGGCGAGTTGGATATCACGTTCAGCGACAAACGC
ATTGAACCTCTGCTGTTTCGTTACCGCGCGCGCAACTTCCCGTGGACGCTCGACGACGAAGAGCAACGCCGCTGGGCGAA
CCATTGTCGCGATTACTACGAAACACATCTGCCTGATTACATGCTGAACCTGGAAAATCTGGTGCATGAACATGAAAGTG
ATGAAAAGAAAATCGCGATTCTCAAATCCGTTTACCAATACGTAGAGAAGCTAGCCTCTTAG

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (209-469)

• Exonuclease (RNase_T) (10-190)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	83.439	99.577	0.831