Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   LUM42_RS04540 Genome accession   NZ_CP089603
Coordinates   967767..969128 (+) Length   453 a.a.
NCBI ID   WP_086027297.1    Uniprot ID   -
Organism   Vibrio furnissii strain VFN3     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 962767..974128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUM42_RS24300 - 964493..964627 (+) 135 WP_269785678.1 hypothetical protein -
  LUM42_RS04535 (LUM42_04535) uvrB 965450..967480 (+) 2031 WP_055466263.1 excinuclease ABC subunit UvrB -
  LUM42_RS04540 (LUM42_04540) luxO 967767..969128 (+) 1362 WP_086027297.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  LUM42_RS04545 (LUM42_04545) luxU 969135..969473 (+) 339 WP_004726642.1 quorum-sensing phosphorelay protein LuxU -
  LUM42_RS04550 (LUM42_04550) - 969462..970352 (-) 891 WP_055466264.1 YvcK family protein -
  LUM42_RS04555 (LUM42_04555) moaA 970662..971651 (+) 990 WP_014205522.1 GTP 3',8-cyclase MoaA -
  LUM42_RS04560 (LUM42_04560) moaB 971722..972234 (+) 513 WP_004726639.1 molybdenum cofactor biosynthesis protein B -
  LUM42_RS04565 (LUM42_04565) moaC 972244..972723 (+) 480 WP_004726638.1 cyclic pyranopterin monophosphate synthase MoaC -
  LUM42_RS04570 (LUM42_04570) moaD 972720..972965 (+) 246 WP_004726637.1 molybdopterin synthase sulfur carrier subunit -
  LUM42_RS04575 (LUM42_04575) moaE 972967..973422 (+) 456 WP_014205521.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50359.61 Da        Isoelectric Point: 5.7310

>NTDB_id=638348 LUM42_RS04540 WP_086027297.1 967767..969128(+) (luxO) [Vibrio furnissii strain VFN3]
MVEDTASVAALYRSYLTPLEIDINIVGTGREAIESIAHREPDLILLDLRLPDMTGMDVLHAVKQRSPDVPVIFMTAHGSI
DTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKANKLKNETDNPGNQNYQGFIGSSQTMLAVYRTIDSAATSKASIFIT
GESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGGTLFLDELCEMDLD
LQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRERGDDVIEIAYSLLG
YMSKEEGKGFVRLAPDVVERFKQYEWPGNVRQLQNVLRNVVVLNEGREIALTMLPPPLNQLSDSRINVPKASPAPVSVHE
IFPLWMTEKQAIEKAIEACDGNIPRAAGYLDVSPSTIYRKLQTWNEKVQEKEK

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=638348 LUM42_RS04540 WP_086027297.1 967767..969128(+) (luxO) [Vibrio furnissii strain VFN3]
ATGGTCGAAGACACTGCGTCGGTTGCGGCGTTGTATCGTTCGTACCTGACACCGCTCGAGATCGATATCAACATTGTCGG
AACGGGACGTGAAGCGATCGAGAGTATCGCCCATCGCGAGCCGGATCTGATCCTCCTCGATCTGCGCCTGCCGGACATGA
CGGGTATGGACGTCTTGCACGCGGTGAAACAGCGTTCACCGGATGTGCCGGTGATTTTTATGACGGCTCATGGCTCCATT
GATACCGCCGTCGAAGCCATGCGCCACGGCGCGCAAGATTTCCTCATCAAACCGTGCGAAGCCGACCGTTTGCGTGTGAC
GGTCAACAACGCCATTCGCAAGGCAAACAAACTCAAAAACGAGACCGACAATCCGGGTAATCAGAATTACCAAGGGTTCA
TTGGCAGCAGCCAGACCATGTTGGCGGTGTATCGCACCATCGACTCTGCGGCCACCAGTAAAGCGAGTATTTTCATTACC
GGCGAAAGTGGTACCGGCAAAGAGGTGTGCGCCGAAGCCATCCATGCGGCCAGCAAGCGCGGCGACAAGCCGTTCATTGC
CATTAACTGTGCGGCCATTCCCAAAGATTTGATTGAAAGTGAGCTGTTTGGTCACGTCAAAGGCGCGTTTACTGGCGCGG
CGACGGATCGTCAGGGCGCGGCAGAACTGGCCGATGGCGGCACCTTGTTCTTGGACGAGCTGTGTGAAATGGATTTGGAT
CTGCAAACCAAGCTGCTGCGTTTTATTCAGACCGGGACCTTCCAGAAAGTCGGATCGTCTAAAATGAAGAGTGTGGACGT
GCGTTTTGTGTGTGCGACCAACCGTGACCCTTGGAAAGAAGTGCAAGAAGGGCGTTTTCGTGAAGACTTGTATTACCGTC
TGTACGTGATTCCGTTGCATTTGCCCCCTTTGCGTGAGCGCGGCGATGATGTGATTGAAATCGCGTATTCACTACTGGGG
TACATGTCGAAAGAAGAAGGTAAAGGCTTTGTACGTTTGGCGCCAGATGTCGTAGAGCGCTTCAAACAGTACGAATGGCC
GGGGAACGTGCGCCAGCTGCAGAACGTGCTGCGCAACGTGGTGGTGCTTAATGAAGGGCGTGAAATTGCGCTGACAATGC
TGCCGCCACCGCTGAACCAATTGAGTGACTCACGCATCAATGTCCCGAAAGCCAGCCCGGCGCCGGTGTCGGTGCATGAA
ATTTTCCCGTTATGGATGACAGAAAAGCAGGCGATCGAAAAAGCAATCGAGGCCTGTGATGGCAATATTCCGCGTGCTGC
GGGCTATTTGGATGTCAGTCCATCCACCATCTACCGCAAGCTGCAAACCTGGAATGAAAAGGTGCAGGAAAAGGAAAAGT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-442)

Response regulator receiver domain (Response_reg)

(2-108)

Sigma-54 interaction domain (Sigma54_activat)

(134-299)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

90.828

98.675

0.896