Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   LUM42_RS02715 Genome accession   NZ_CP089603
Coordinates   560426..560944 (+) Length   172 a.a.
NCBI ID   WP_014205765.1    Uniprot ID   A0A0Q2V091
Organism   Vibrio furnissii strain VFN3     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 555426..565944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUM42_RS02705 (LUM42_02705) gshA 558228..559793 (+) 1566 WP_232658443.1 glutamate--cysteine ligase -
  LUM42_RS02710 (LUM42_02710) - 559795..560400 (+) 606 WP_044367718.1 hypothetical protein -
  LUM42_RS02715 (LUM42_02715) luxS 560426..560944 (+) 519 WP_014205765.1 S-ribosylhomocysteine lyase Regulator
  LUM42_RS02720 (LUM42_02720) - 561051..562325 (-) 1275 WP_004723872.1 HlyC/CorC family transporter -
  LUM42_RS02725 (LUM42_02725) - 562416..563210 (-) 795 WP_004723874.1 inner membrane protein YpjD -
  LUM42_RS02730 (LUM42_02730) ffh 563423..564802 (+) 1380 WP_004723876.1 signal recognition particle protein -
  LUM42_RS02735 (LUM42_02735) rpsP 565028..565276 (+) 249 WP_004723879.1 30S ribosomal protein S16 -
  LUM42_RS02740 (LUM42_02740) rimM 565304..565858 (+) 555 WP_004723882.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18856.59 Da        Isoelectric Point: 4.6766

>NTDB_id=638345 LUM42_RS02715 WP_014205765.1 560426..560944(+) (luxS) [Vibrio furnissii strain VFN3]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSEKGIHTLEHLYAGFMRAHLNGANVEIIDISP
MGCRTGFYMSLIGAPSEEQVAAAWLASMQDVLSVESQDQIPELNEYQCGTAAMHSLNEAKAIAETVIAAGIQVNKNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=638345 LUM42_RS02715 WP_014205765.1 560426..560944(+) (luxS) [Vibrio furnissii strain VFN3]
ATGCCATTATTAGACAGTTTTACCGTCGACCACACTCGCATGAACGCACCGGCTGTGCGTGTTGCGAAAACCATGCAAAC
GCCGAAAGGCGACACCATTACGGTGTTTGACCTGCGTTTCACCATGCCAAACAAAGACATTCTGTCCGAGAAAGGGATTC
ATACGCTGGAGCATCTGTACGCCGGCTTTATGCGTGCGCACCTCAATGGCGCGAACGTGGAAATTATCGACATCTCGCCG
ATGGGATGTCGCACCGGGTTTTACATGAGCCTGATTGGTGCGCCAAGCGAAGAGCAAGTCGCTGCCGCTTGGTTGGCGTC
GATGCAAGACGTATTGAGTGTCGAAAGCCAGGATCAAATTCCTGAGCTGAACGAATACCAGTGCGGCACCGCAGCGATGC
ACTCCCTGAATGAAGCCAAAGCGATTGCTGAAACCGTGATTGCCGCAGGCATTCAGGTCAACAAGAATGATGAATTGGCG
TTGCCCGAATCGATGCTCAATGAGCTGAAAGTGCACTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

91.279

100

0.913