Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   LRS65_RS20565 Genome accession   NZ_CP089601
Coordinates   4041881..4042675 (-) Length   264 a.a.
NCBI ID   WP_011110369.1    Uniprot ID   A0A9Q5QPF5
Organism   Bacillus cereus strain C-1     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 4036881..4047675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRS65_RS20540 (LRS65_20515) - 4037429..4039501 (-) 2073 WP_025687929.1 sigma-54-dependent Fis family transcriptional regulator -
  LRS65_RS20545 (LRS65_20520) - 4039639..4039872 (+) 234 WP_001190211.1 DUF2627 domain-containing protein -
  LRS65_RS20550 (LRS65_20525) - 4039922..4040650 (-) 729 WP_000172575.1 glycerophosphodiester phosphodiesterase -
  LRS65_RS20555 (LRS65_20530) - 4040701..4040847 (+) 147 WP_001247671.1 YycC family protein -
  LRS65_RS20560 (LRS65_20535) - 4041089..4041628 (-) 540 WP_025687930.1 PRK06770 family protein -
  LRS65_RS20565 (LRS65_20540) spo0A 4041881..4042675 (-) 795 WP_011110369.1 sporulation transcription factor Spo0A Regulator
  LRS65_RS20570 (LRS65_20545) spoIVB 4042966..4044264 (-) 1299 WP_002000940.1 SpoIVB peptidase -
  LRS65_RS20575 (LRS65_20550) recN 4044383..4046122 (-) 1740 WP_257115670.1 DNA repair protein RecN Machinery gene
  LRS65_RS20580 (LRS65_20555) argR 4046387..4046836 (-) 450 WP_001032580.1 arginine repressor ArgR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29415.18 Da        Isoelectric Point: 7.1175

>NTDB_id=638315 LRS65_RS20565 WP_011110369.1 4041881..4042675(-) (spo0A) [Bacillus cereus strain C-1]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGTAYNGQECLNLLTDKQPDVLVLDIIMPHLDGLAVLEKMRHIERLKQP
SVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKANAMIKRPLPSFRSATTVDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=638315 LRS65_RS20565 WP_011110369.1 4041881..4042675(-) (spo0A) [Bacillus cereus strain C-1]
GTGGAGAAAATTAAAGTATGTCTTGTGGATGATAATAAAGAACTAGTATCAATGTTAGAGAGCTATGTAGCCGCTCAAGA
TGATATGGAAGTAATCGGTACTGCTTATAATGGTCAAGAGTGTTTAAACTTATTAACAGATAAGCAACCTGATGTACTCG
TTTTAGACATTATTATGCCACACTTAGATGGTTTAGCTGTATTGGAGAAAATGCGACATATTGAAAGGTTAAAACAGCCT
AGCGTAATTATGTTGACAGCATTTGGCCAAGAAGATGTGACGAAAAAAGCAGTTGACTTAGGTGCCTCATATTTCATATT
AAAACCATTTGATATGGAGAATTTAACGAGTCATATTCGTCAAGTGAGTGGTAAAGCAAACGCTATGATTAAACGTCCAC
TACCATCATTCCGATCAGCAACAACAGTAGATGGAAAACCGAAAAACTTAGATGCGAGTATTACGAGTATCATTCATGAA
ATTGGTGTACCCGCTCATATTAAAGGATATATGTATTTACGAGAAGCAATCTCCATGGTATACAACGATATCGAATTATT
AGGATCGATTACGAAAGTATTGTATCCAGATATCGCAAAGAAATATAATACAACAGCAAGCCGTGTGGAGCGCGCAATTC
GTCACGCGATTGAAGTAGCTTGGAGCCGTGGGAATATTGATTCTATTTCGTCCTTATTCGGTTATACAGTATCCATGTCA
AAAGCAAAACCTACGAACTCTGAGTTTATCGCAATGGTTGCGGATAAGCTGAGACTTGAACATAAAGCTAGCTGA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

80.899

100

0.818