Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   LRS65_RS11910 Genome accession   NZ_CP089601
Coordinates   2295949..2296227 (+) Length   92 a.a.
NCBI ID   WP_025687553.1    Uniprot ID   -
Organism   Bacillus cereus strain C-1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2290949..2301227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRS65_RS11890 (LRS65_11870) - 2292623..2293432 (+) 810 WP_000678369.1 papain-like cysteine protease family protein -
  LRS65_RS11895 (LRS65_11875) - 2293458..2294060 (+) 603 WP_000517271.1 hypothetical protein -
  LRS65_RS11900 (LRS65_11880) - 2294304..2294555 (-) 252 WP_000827560.1 LuxR C-terminal-related transcriptional regulator -
  LRS65_RS11905 (LRS65_11885) - 2294930..2295808 (+) 879 WP_000397979.1 helix-turn-helix domain-containing protein -
  LRS65_RS11910 (LRS65_11890) abrB 2295949..2296227 (+) 279 WP_025687553.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  LRS65_RS11915 (LRS65_11895) - 2296843..2298093 (+) 1251 WP_025687554.1 hypothetical protein -
  LRS65_RS11920 (LRS65_11900) - 2298161..2298919 (+) 759 WP_000347994.1 TSUP family transporter -
  LRS65_RS11925 (LRS65_11905) - 2299172..2299831 (+) 660 WP_025687555.1 CatB-related O-acetyltransferase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10360.24 Da        Isoelectric Point: 10.0092

>NTDB_id=638308 LRS65_RS11910 WP_025687553.1 2295949..2296227(+) (abrB) [Bacillus cereus strain C-1]
MKSRGITRKADSMGRIVIPMEIRRSLGIVEKDSLEIFIEEDQIILRKYQSPRACALTGDISDSNISLANGKIIVSPNGME
LLIKKLQQYLLK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=638308 LRS65_RS11910 WP_025687553.1 2295949..2296227(+) (abrB) [Bacillus cereus strain C-1]
ATGAAATCAAGAGGAATTACTCGTAAAGCAGATAGCATGGGGCGTATTGTTATTCCAATGGAAATAAGACGGAGTTTAGG
AATTGTAGAAAAAGATTCTCTTGAAATTTTTATAGAAGAGGACCAGATTATTTTACGAAAATATCAATCTCCAAGAGCTT
GTGCACTTACAGGGGATATTTCAGACAGCAATATTTCGTTAGCGAATGGGAAGATTATTGTAAGTCCAAACGGGATGGAA
CTGTTAATAAAGAAGTTACAGCAATATCTTTTAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

51.111

97.826

0.5