Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   LRS65_RS09430 Genome accession   NZ_CP089601
Coordinates   1821607..1821894 (+) Length   95 a.a.
NCBI ID   WP_000648324.1    Uniprot ID   -
Organism   Bacillus cereus strain C-1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1816607..1826894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRS65_RS09410 (LRS65_09390) - 1817781..1817978 (+) 198 WP_001048091.1 DUF4083 domain-containing protein -
  LRS65_RS09415 (LRS65_09395) - 1818010..1818471 (+) 462 WP_000024999.1 NUDIX hydrolase -
  LRS65_RS09420 (LRS65_09400) nadE 1818521..1819339 (-) 819 WP_000174901.1 ammonia-dependent NAD(+) synthetase -
  LRS65_RS09425 (LRS65_09405) - 1819610..1821490 (+) 1881 WP_001025988.1 ABC transporter permease -
  LRS65_RS09430 (LRS65_09410) abrB 1821607..1821894 (+) 288 WP_000648324.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  LRS65_RS09435 (LRS65_09415) - 1822170..1823117 (+) 948 WP_000099760.1 serine protease -
  LRS65_RS09440 (LRS65_09420) - 1823157..1823504 (+) 348 Protein_1780 MFS transporter -
  LRS65_RS27360 - 1823553..1823759 (+) 207 WP_001101741.1 hypothetical protein -
  LRS65_RS09445 (LRS65_09425) - 1823903..1824265 (+) 363 WP_257115998.1 DUF805 domain-containing protein -
  LRS65_RS09450 (LRS65_09430) - 1824465..1824689 (-) 225 WP_000162602.1 hypothetical protein -
  LRS65_RS09455 (LRS65_09435) - 1824774..1825121 (-) 348 WP_000426310.1 DUF4257 domain-containing protein -
  LRS65_RS09460 (LRS65_09440) - 1825318..1825845 (+) 528 WP_000687342.1 DinB family protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10587.32 Da        Isoelectric Point: 4.8408

>NTDB_id=638306 LRS65_RS09430 WP_000648324.1 1821607..1821894(+) (abrB) [Bacillus cereus strain C-1]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEADKIILQKYQPYNACQITGDVSEQNISLANGNITVGIEGAE
YLVKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=638306 LRS65_RS09430 WP_000648324.1 1821607..1821894(+) (abrB) [Bacillus cereus strain C-1]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATCCCTAAAGAATTACGCGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTTGTAGAAGCAGATAAAATCATTTTACAAAAATATCAACCTTACAATGCTT
GCCAAATCACAGGTGATGTTTCAGAACAGAACATATCATTAGCAAATGGAAATATTACTGTTGGGATAGAGGGAGCGGAA
TATTTAGTAAAAGAAATAGAAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.556

94.737

0.526