Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NDQ80_RS11230 Genome accession   NZ_CP106821
Coordinates   2127176..2128144 (-) Length   322 a.a.
NCBI ID   WP_003699352.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10529     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2122176..2133144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDQ80_RS11205 (NDQ80_11220) - 2122722..2124029 (-) 1308 WP_047923357.1 YadA-like family protein -
  NDQ80_RS11210 (NDQ80_11225) - 2124015..2124668 (+) 654 WP_134993999.1 IS1595 family transposase -
  NDQ80_RS11215 (NDQ80_11230) - 2124703..2125458 (-) 756 WP_003692365.1 ABC transporter ATP-binding protein -
  NDQ80_RS11220 (NDQ80_11235) - 2125542..2126168 (-) 627 WP_003687047.1 FmdE family protein -
  NDQ80_RS11225 (NDQ80_11240) - 2126213..2127186 (-) 974 Protein_2165 iron chelate uptake ABC transporter family permease subunit -
  NDQ80_RS11230 (NDQ80_11245) ceuB 2127176..2128144 (-) 969 WP_003699352.1 ABC transporter permease Machinery gene
  NDQ80_RS11235 (NDQ80_11250) - 2128163..2128354 (-) 192 WP_162098110.1 hypothetical protein -
  NDQ80_RS11240 (NDQ80_11255) - 2128372..2129343 (-) 972 WP_003699354.1 siderophore ABC transporter substrate-binding protein -
  NDQ80_RS11245 (NDQ80_11260) fetA 2129648..2131789 (-) 2142 WP_003692375.1 TonB-dependent siderophore receptor FetA/FrpB -
  NDQ80_RS11250 (NDQ80_11265) - 2132295..2132585 (+) 291 WP_003687059.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 34400.71 Da        Isoelectric Point: 10.5988

>NTDB_id=638304 NDQ80_RS11230 WP_003699352.1 2127176..2128144(-) (ceuB) [Neisseria gonorrhoeae strain 10529]
MTAKPFSLNLANLLLPAVLFAVSLSVGIADFRWSDVFSLSDSQQVMFISRLPRTFAIVLTGASMAVAGMIMQILMRNRFV
EPSMAGAGQSAALGLLLMSLLLPAAPLPVKMSVAAVAALIGMLVFMLLIRRLPPTAQLMVPLVGIIFGGVVEAVATFIAY
KNEMLQMLGVWQQGDFSSVLLGRYELLWITGGLAVFAYLIADRLTILGLGETVSVNLGLNRTAVLWSGLIIVALITSLVI
VTVGNIPFIGLVVPNIVSRLTGDRLRQSLPAVALLGASMVLLCDILGRMIVFPFEIPVSTVFGVLGTALFLWLLLRKPAH
AV

Nucleotide


Download         Length: 969 bp        

>NTDB_id=638304 NDQ80_RS11230 WP_003699352.1 2127176..2128144(-) (ceuB) [Neisseria gonorrhoeae strain 10529]
ATGACTGCCAAACCTTTTTCCCTCAACCTGGCCAACCTCCTGCTGCCGGCGGTATTGTTTGCCGTCAGCCTGTCGGTCGG
CATTGCCGATTTCCGCTGGTCGGATGTGTTTTCGCTGTCCGACAGCCAACAGGTCATGTTCATCAGCCGCCTGCCGCGCA
CGTTTGCGATTGTGTTGACGGGCGCGTCGATGGCGGTGGCGGGGATGATTATGCAGATTCTGATGCGCAACCGTTTTGTC
GAGCCTTCTATGGCGGGTGCGGGCCAAAGTGCGGCTTTGGGTTTGCTTCTGATGTCCCTGCTGCTGCCTGCCGCGCCGCT
GCCGGTCAAAATGTCGGTTGCCGCCGTTGCCGCGCTGATCGGGATGTTGGTCTTTATGCTGCTGATCCGCCGCCTGCCGC
CGACGGCGCAACTGATGGTGCCGCTGGTGGGGATTATTTTCGGCGGCGTGGTTGAGGCGGTGGCGACGTTTATCGCGTAT
AAAAACGAAATGCTGCAAATGCTCGGCGTGTGGCAGCAGGGCGATTTTTCGAGCGTGCTGCTGGGGCGGTACGAGCTGCT
TTGGATTACGGGCGGTTTGGCGGTGTTTGCCTACCTGATTGCCGACCGGCTGACGATTTTGGGGCTGGGCGAGACGGTGA
GCGTGAATTTGGGTTTGAACCGGACGGCGGTGTTGTGGTCGGGTTTGATTATTGTGGCACTGATTACATCGCTGGTCATT
GTAACGGTCGGCAATATTCCGTTTATCGGGCTGGTCGTGCCGAATATCGTCAGCCGCCTGACGGGCGACAGGCTGCGCCA
AAGCCTGCCTGCGGTCGCCCTCTTGGGCGCGTCTATGGTGCTGCTGTGCGATATTTTGGGACGCATGATTGTGTTTCCGT
TTGAAATTCCGGTCTCCACGGTTTTTGGTGTGTTGGGTACGGCTTTGTTTTTGTGGCTTTTATTAAGGAAACCTGCCCAT
GCCGTCTGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(17-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

41.196

93.478

0.385