Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   LUV29_RS17200 Genome accession   NZ_CP089592
Coordinates   3257402..3258046 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain Bsi     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3252402..3263046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUV29_RS17165 (LUV29_17165) mrpB 3253594..3254025 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  LUV29_RS17170 (LUV29_17170) mrpC 3254025..3254366 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  LUV29_RS17175 (LUV29_17175) mrpD 3254359..3255840 (+) 1482 WP_003244432.1 Na+/H+ antiporter subunit D -
  LUV29_RS17180 (LUV29_17180) mrpE 3255846..3256322 (+) 477 WP_003244015.1 Na+/H+ antiporter subunit E -
  LUV29_RS17185 (LUV29_17185) mrpF 3256322..3256606 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  LUV29_RS17190 (LUV29_17190) mnhG 3256590..3256964 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  LUV29_RS17195 (LUV29_17195) yuxO 3257003..3257383 (-) 381 WP_003228810.1 hotdog fold thioesterase -
  LUV29_RS17200 (LUV29_17200) comA 3257402..3258046 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  LUV29_RS17205 (LUV29_17205) comP 3258127..3260435 (-) 2309 Protein_3329 two-component system sensor histidine kinase ComP -
  LUV29_RS17210 (LUV29_17210) comX 3260450..3260617 (-) 168 WP_003242801.1 competence pheromone ComX Regulator
  LUV29_RS17215 (LUV29_17215) comQ 3260605..3261504 (-) 900 WP_003243039.1 ComX modifying isoprenyl transferase ComQ Regulator
  LUV29_RS17220 (LUV29_17220) degQ 3261689..3261829 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  LUV29_RS17225 (LUV29_17225) - 3262051..3262176 (+) 126 WP_003228793.1 hypothetical protein -
  LUV29_RS17230 (LUV29_17230) - 3262290..3262658 (+) 369 WP_003243784.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=638244 LUV29_RS17200 WP_003220716.1 3257402..3258046(-) (comA) [Bacillus subtilis strain Bsi]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=638244 LUV29_RS17200 WP_003220716.1 3257402..3258046(-) (comA) [Bacillus subtilis strain Bsi]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1