Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   LUV29_RS12175 Genome accession   NZ_CP089592
Coordinates   2345404..2346024 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain Bsi     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2340404..2351024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUV29_RS12135 (LUV29_12135) ptsA 2341535..2342041 (-) 507 WP_009967573.1 PTS sugar transporter subunit IIA -
  LUV29_RS12140 (LUV29_12140) ypqA 2342179..2342598 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  LUV29_RS12145 (LUV29_12145) sppG 2342619..2342996 (-) 378 WP_004398696.1 YppG family protein -
  LUV29_RS12150 (LUV29_12150) yppF 2343184..2343372 (+) 189 WP_003230690.1 YppF family protein -
  LUV29_RS12155 (LUV29_12155) yppE 2343411..2343782 (-) 372 WP_003246080.1 YppE family protein -
  LUV29_RS12160 (LUV29_12160) yppD 2343828..2344073 (-) 246 WP_004398488.1 YppD family protein -
  LUV29_RS12165 (LUV29_12165) sspM 2344272..2344376 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  LUV29_RS12170 (LUV29_12170) yppC 2344401..2345363 (-) 963 WP_004398707.1 DUF2515 domain-containing protein -
  LUV29_RS12175 (LUV29_12175) recU 2345404..2346024 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  LUV29_RS12180 (LUV29_12180) ponA 2346046..2348790 (+) 2745 WP_004398589.1 transglycosylase domain-containing protein -
  LUV29_RS12185 (LUV29_12185) ypoC 2348866..2349360 (-) 495 WP_009967579.1 YpoC family protein -
  LUV29_RS12190 (LUV29_12190) nth 2349357..2350016 (-) 660 WP_009967580.1 endonuclease III -
  LUV29_RS12195 (LUV29_12195) dnaD 2350035..2350733 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=638219 LUV29_RS12175 WP_004399067.1 2345404..2346024(+) (recU) [Bacillus subtilis strain Bsi]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=638219 LUV29_RS12175 WP_004399067.1 2345404..2346024(+) (recU) [Bacillus subtilis strain Bsi]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1