Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LQ777_RS16775 Genome accession   NZ_CP089538
Coordinates   3960452..3961837 (-) Length   461 a.a.
NCBI ID   WP_232559085.1    Uniprot ID   -
Organism   Spirosoma oryzicola strain RHs26     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3955452..3966837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ777_RS16745 (LQ777_16755) - 3955538..3956779 (+) 1242 WP_232559079.1 MFS transporter -
  LQ777_RS16750 (LQ777_16760) - 3956868..3957179 (-) 312 WP_232559080.1 antibiotic biosynthesis monooxygenase family protein -
  LQ777_RS16755 (LQ777_16765) - 3957302..3958273 (+) 972 WP_232559081.1 aldo/keto reductase -
  LQ777_RS16760 (LQ777_16770) - 3958356..3959234 (-) 879 WP_232559082.1 alpha/beta hydrolase -
  LQ777_RS16765 (LQ777_16775) - 3959345..3959848 (+) 504 WP_232559083.1 DinB family protein -
  LQ777_RS16770 (LQ777_16780) - 3959842..3960369 (-) 528 WP_232559084.1 GNAT family N-acetyltransferase -
  LQ777_RS16775 (LQ777_16785) radA 3960452..3961837 (-) 1386 WP_232559085.1 DNA repair protein RadA Machinery gene
  LQ777_RS16780 (LQ777_16790) - 3962064..3962738 (+) 675 WP_232559086.1 porin family protein -
  LQ777_RS16785 (LQ777_16795) - 3962884..3963303 (-) 420 WP_232559087.1 LytTR family DNA-binding domain-containing protein -
  LQ777_RS16790 (LQ777_16800) - 3963556..3963987 (-) 432 WP_232559088.1 LytTR family DNA-binding domain-containing protein -
  LQ777_RS16795 (LQ777_16805) pheS 3964358..3965395 (+) 1038 WP_232559089.1 phenylalanine--tRNA ligase subunit alpha -
  LQ777_RS16800 (LQ777_16810) - 3965491..3966687 (+) 1197 WP_232559090.1 exodeoxyribonuclease VII large subunit -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 50099.49 Da        Isoelectric Point: 5.9747

>NTDB_id=638051 LQ777_RS16775 WP_232559085.1 3960452..3961837(-) (radA) [Spirosoma oryzicola strain RHs26]
MAKIKTTYFCQSCGHQSAKWLGRCPSCGEWNTFVEELVQKDEPEKGSWRSPSSGPGGIKTTPKPKALHAINYEEQPRIAT
IDGELNRVLGGGIVPGSLVLIGGEPGIGKSTLLLQIALSLAGLRVLYVSGEESEQQIKMRAERLDAPVSDCHVMTETSTQ
NIFRVAEHFEPEILIIDSIQTMQSSLVESGAGSVSQVRECTAEFMKYAKESGVPVFMIGHITKEGTLAGPKVLEHMVDTV
LTFEGDRHTTYRILRTTKNRFGSTDELGIYEMLGSGLRQVTNPSEILISQRDEALSGVTIGSMLEGNRPLMIETQALVSV
ATYGTPQRSSTGFDAKRLNMLLAVLEKRGGFRLGQQDVFLNIAGGLRVEDPAIDLAVCAAVVSSYEDTAILPSVAFAAEV
GLGGEVRAVSRIESRIAEAEKLGFKKIFISKYNLKGLDAKDYKISIKPVSRLDEVFQGVLL

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=638051 LQ777_RS16775 WP_232559085.1 3960452..3961837(-) (radA) [Spirosoma oryzicola strain RHs26]
ATGGCCAAAATAAAAACCACCTATTTCTGTCAGAGTTGCGGCCACCAGTCGGCTAAATGGCTGGGTCGTTGTCCGTCCTG
TGGCGAGTGGAACACGTTCGTTGAAGAACTCGTCCAGAAGGACGAACCCGAGAAAGGAAGCTGGCGCAGTCCATCGTCTG
GACCGGGTGGTATAAAGACTACGCCTAAACCCAAGGCGCTCCACGCCATCAATTACGAAGAGCAACCCCGGATCGCAACG
ATTGATGGCGAACTAAACCGAGTACTGGGCGGTGGGATTGTCCCCGGCTCGCTTGTGCTTATCGGTGGTGAACCGGGAAT
TGGCAAATCGACGCTGCTGCTGCAAATTGCCCTTAGCCTGGCTGGACTACGCGTGTTATACGTGTCGGGTGAAGAAAGTG
AGCAACAGATCAAGATGCGAGCCGAGCGGTTGGACGCGCCCGTGAGCGATTGCCACGTGATGACCGAAACTTCGACGCAG
AACATCTTTCGCGTTGCTGAACACTTTGAACCGGAAATTCTGATCATCGACTCCATCCAGACAATGCAGTCATCGCTGGT
CGAATCGGGGGCAGGAAGCGTCTCGCAGGTGCGCGAATGCACGGCTGAGTTCATGAAATACGCCAAAGAAAGCGGAGTGC
CTGTGTTTATGATCGGTCATATTACCAAAGAAGGGACGCTGGCTGGTCCTAAAGTGTTAGAACACATGGTCGATACGGTC
CTGACCTTCGAAGGGGACCGGCACACGACGTATCGAATCCTGCGTACGACAAAAAACCGCTTTGGCAGTACCGACGAACT
GGGAATTTATGAAATGCTTGGCTCCGGACTTCGGCAGGTGACCAACCCGTCCGAAATCCTGATTTCGCAGCGCGACGAAG
CGTTGAGTGGCGTTACCATCGGGTCGATGCTGGAAGGGAATCGGCCCTTGATGATCGAAACGCAGGCATTGGTTAGCGTG
GCTACGTACGGAACTCCGCAACGAAGTAGCACGGGTTTCGACGCGAAGCGATTGAATATGCTGCTGGCTGTTCTGGAAAA
GCGGGGTGGGTTCCGATTAGGCCAGCAGGACGTGTTTCTTAACATTGCCGGTGGACTACGCGTAGAAGATCCGGCCATCG
ACCTGGCGGTATGCGCGGCTGTGGTGTCCAGCTACGAGGATACGGCTATTCTGCCGTCGGTGGCTTTTGCTGCCGAAGTA
GGGCTTGGGGGCGAAGTACGGGCCGTCAGTCGGATCGAATCGCGGATTGCCGAAGCGGAGAAGTTAGGCTTTAAGAAAAT
CTTTATTTCTAAATACAACCTGAAAGGCTTGGACGCCAAAGACTATAAGATCAGCATCAAGCCCGTGTCTCGACTGGATG
AGGTATTTCAGGGAGTGTTGTTGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(347-433)

AAA domain (AAA_25)

(85-225)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

50.108

100

0.501
  radA Streptococcus mitis SK321

50.108

100

0.501
  radA Streptococcus mitis NCTC 12261

50.108

100

0.501
  radA Streptococcus pneumoniae TIGR4

50.108

100

0.501
  radA Streptococcus pneumoniae D39

50.108

100

0.501
  radA Streptococcus pneumoniae R6

50.108

100

0.501
  radA Bacillus subtilis subsp. subtilis str. 168

52.511

95.011

0.499