Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   U875_RS12810 Genome accession   NC_022904
Coordinates   2870753..2872126 (-) Length   457 a.a.
NCBI ID   WP_023874151.1    Uniprot ID   A0A378YAD7
Organism   Pandoraea pnomenusa 3kgm     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2865753..2877126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U875_RS12795 (U875_13115) prmB 2866076..2866972 (+) 897 WP_023596262.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  U875_RS12800 (U875_13120) cls 2867101..2868528 (+) 1428 WP_023596263.1 cardiolipin synthase -
  U875_RS12805 (U875_13130) - 2868677..2870620 (+) 1944 WP_023874152.1 ATP-binding cassette domain-containing protein -
  U875_RS12810 (U875_13135) radA 2870753..2872126 (-) 1374 WP_023874151.1 DNA repair protein RadA Machinery gene
  U875_RS12815 (U875_13140) alr 2872150..2873220 (-) 1071 WP_031627278.1 alanine racemase -
  U875_RS12820 (U875_13145) lplT 2873559..2874851 (+) 1293 WP_023596267.1 lysophospholipid transporter LplT -
  U875_RS12825 (U875_13150) thiD 2874853..2875686 (+) 834 WP_023596268.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  U875_RS12830 - 2875705..2876979 (-) 1275 WP_023596269.1 DUF1853 family protein -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 48164.34 Da        Isoelectric Point: 7.2033

>NTDB_id=63802 U875_RS12810 WP_023874151.1 2870753..2872126(-) (radA) [Pandoraea pnomenusa 3kgm]
MAKAKTVYICTECGGQTPKWAGQCPNCNGWNTLVESVAETSTGHRYQSLAKSTPVRKLAQIEAADVPRFSSGVSEFDRVL
GGGLVAGGVVLIGGDPGIGKSTLLLQSLAHLARERRALYVSGEESGAQIALRAQRLGLGAAGEGGGELDLLAEIQLEKIL
GAIESEKPDVVVIDSIQTIYSEALTSAPGSVAQVRECAAQLTRSAKQSGVTVIMVGHVTKEGSLAGPRVLEHIVDTVLYF
EGDTHSSYRLVRAFKNRFGAVNELGVFAMTEKGLRGVANPSALFLSQHEQSVPGSCVLVTQEGTRPLLVEVQALVDTAQV
PNPRRLAVGLEQNRLAMLLAVMHRHAGIACFDQDVFLNAVGGVKISEPAADLAVLLAIHSSLRNKPLPRGIVAFGEVGLA
GEIRPSPRGQDRLKEAAKLGFSIAIIPKANAPKQPIDGLEVHAVDRLEQAISVVAGL

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=63802 U875_RS12810 WP_023874151.1 2870753..2872126(-) (radA) [Pandoraea pnomenusa 3kgm]
ATGGCCAAAGCCAAGACTGTCTATATCTGTACCGAGTGCGGCGGGCAGACGCCCAAGTGGGCGGGGCAATGTCCCAACTG
CAACGGCTGGAATACGCTCGTCGAGTCGGTGGCCGAAACGTCGACCGGCCACCGGTACCAGTCGCTCGCCAAGAGCACGC
CGGTGCGCAAGCTCGCGCAGATCGAAGCGGCCGACGTGCCGCGATTTTCCAGCGGTGTGAGCGAATTCGACCGGGTGCTC
GGCGGCGGGCTCGTCGCCGGCGGCGTGGTGCTGATCGGCGGCGATCCCGGAATCGGCAAGTCGACGCTGCTGCTCCAGTC
CCTGGCGCATCTGGCGCGCGAGCGCCGCGCGCTTTACGTGAGCGGCGAAGAGTCCGGCGCGCAGATTGCGCTGCGCGCGC
AGCGACTGGGCCTCGGTGCGGCGGGCGAGGGCGGCGGTGAGCTCGATCTGCTTGCCGAAATCCAGTTGGAGAAGATTCTC
GGCGCGATCGAATCGGAAAAGCCGGATGTCGTGGTGATCGATTCGATCCAGACCATTTACTCCGAAGCCCTCACCTCGGC
GCCCGGTTCGGTGGCCCAGGTGCGCGAGTGTGCGGCCCAACTCACACGCAGTGCGAAGCAAAGCGGCGTGACCGTCATCA
TGGTCGGCCACGTGACGAAGGAGGGCAGTCTGGCCGGGCCACGCGTGCTTGAACACATCGTCGACACCGTGCTGTATTTC
GAAGGCGACACGCATTCGTCCTATCGCCTCGTTCGCGCGTTCAAGAATCGATTCGGCGCGGTCAACGAACTGGGCGTTTT
CGCCATGACGGAAAAAGGGCTGCGCGGGGTGGCGAATCCGTCGGCCCTGTTCCTTTCGCAGCATGAGCAGAGCGTGCCGG
GCTCCTGCGTGCTGGTGACCCAGGAGGGCACCCGTCCGCTGCTCGTCGAAGTGCAGGCGCTGGTGGATACGGCTCAGGTG
CCGAATCCGCGTCGTCTGGCGGTGGGATTGGAGCAGAACCGGCTGGCGATGTTGCTGGCGGTCATGCATCGTCACGCCGG
CATCGCCTGCTTCGATCAGGATGTGTTCCTCAATGCCGTGGGCGGTGTGAAGATTTCGGAGCCGGCGGCCGACCTGGCCG
TGCTGCTGGCGATCCACTCGTCGCTGCGCAACAAGCCCTTGCCGCGCGGCATCGTCGCGTTTGGCGAAGTCGGGCTGGCC
GGGGAAATCCGGCCGAGCCCGCGGGGGCAGGATCGTCTCAAGGAAGCCGCGAAGCTCGGCTTCTCGATTGCCATCATTCC
GAAGGCGAACGCGCCGAAACAACCCATCGACGGTCTTGAAGTGCATGCCGTCGACCGTCTGGAGCAGGCGATTTCGGTCG
TGGCCGGATTGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A378YAD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.188

100

0.495
  radA Streptococcus pneumoniae Rx1

48.605

94.092

0.457
  radA Streptococcus pneumoniae D39

48.605

94.092

0.457
  radA Streptococcus pneumoniae R6

48.605

94.092

0.457
  radA Streptococcus pneumoniae TIGR4

48.605

94.092

0.457
  radA Streptococcus mitis SK321

48.605

94.092

0.457
  radA Streptococcus mitis NCTC 12261

48.605

94.092

0.457

Multiple sequence alignment