Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   LUA14_RS14670 Genome accession   NZ_CP089530
Coordinates   2908764..2909516 (-) Length   250 a.a.
NCBI ID   WP_012118107.1    Uniprot ID   A7Z796
Organism   Bacillus amyloliquefaciens strain LS1-002-014s     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2903764..2914516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUA14_RS14645 (LUA14_14645) mreC 2904200..2905063 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  LUA14_RS14650 (LUA14_14650) mreB 2905094..2906107 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  LUA14_RS14655 (LUA14_14655) radC 2906199..2906894 (-) 696 WP_007408165.1 RadC family protein -
  LUA14_RS14660 (LUA14_14660) - 2906926..2907495 (-) 570 WP_218791307.1 Maf family protein -
  LUA14_RS14665 (LUA14_14665) - 2907636..2908637 (-) 1002 WP_061860762.1 SPOR domain-containing protein -
  LUA14_RS14670 (LUA14_14670) comC 2908764..2909516 (-) 753 WP_012118107.1 prepilin peptidase Machinery gene
  LUA14_RS14675 (LUA14_14675) - 2909656..2910948 (-) 1293 WP_218791308.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  LUA14_RS14680 (LUA14_14680) - 2911007..2913649 (-) 2643 WP_015417930.1 valine--tRNA ligase -
  LUA14_RS14685 (LUA14_14685) - 2914102..2914293 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27219.94 Da        Isoelectric Point: 9.4293

>NTDB_id=637992 LUA14_RS14670 WP_012118107.1 2908764..2909516(-) (comC) [Bacillus amyloliquefaciens strain LS1-002-014s]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=637992 LUA14_RS14670 WP_012118107.1 2908764..2909516(-) (comC) [Bacillus amyloliquefaciens strain LS1-002-014s]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCA
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTCTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z796

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.871

99.2

0.584