Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | U875_RS02645 | Genome accession | NC_022904 |
| Coordinates | 582400..582921 (+) | Length | 173 a.a. |
| NCBI ID | WP_023594269.1 | Uniprot ID | A0A5E4U5T4 |
| Organism | Pandoraea pnomenusa 3kgm | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 577400..587921
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| U875_RS02620 (U875_02695) | recX | 577555..578100 (+) | 546 | WP_023594264.1 | recombination regulator RecX | - |
| U875_RS02625 (U875_02700) | - | 578420..579106 (+) | 687 | WP_023594265.1 | DUF2889 domain-containing protein | - |
| U875_RS02630 (U875_02705) | sucC | 579103..580269 (+) | 1167 | WP_023594266.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| U875_RS02635 (U875_02710) | sucD | 580351..581232 (+) | 882 | WP_023594267.1 | succinate--CoA ligase subunit alpha | - |
| U875_RS02640 (U875_02715) | - | 581434..582162 (+) | 729 | WP_023594268.1 | TerC family protein | - |
| U875_RS02645 (U875_02720) | pilA | 582400..582921 (+) | 522 | WP_023594269.1 | pilin | Machinery gene |
| U875_RS02650 (U875_02725) | - | 583006..584775 (+) | 1770 | WP_144347216.1 | O-antigen ligase family protein | - |
| U875_RS02655 (U875_02730) | thiD | 584832..585671 (-) | 840 | WP_023872296.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| U875_RS02660 (U875_02735) | - | 585882..586052 (+) | 171 | WP_006400971.1 | rubredoxin | - |
| U875_RS02665 (U875_02740) | - | 586092..587669 (+) | 1578 | WP_023594272.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 173 a.a. Molecular weight: 17654.27 Da Isoelectric Point: 9.8858
>NTDB_id=63799 U875_RS02645 WP_023594269.1 582400..582921(+) (pilA) [Pandoraea pnomenusa 3kgm]
MRRFGHRTTGLAKSRGFTLIELMIVLAIIGVLVTAGVPYLQNYLVRARVVEGLGAAASAKALVSENAMHGAPFNSGWQAP
SATDNVNAVTIDSVSGNVTVAYTQRAGDGALVLVPTSAGPDGKPMALTVGKAPEGQIVWTCYAQGREGAPGGATLPAKLA
PPECRGAATQRGA
MRRFGHRTTGLAKSRGFTLIELMIVLAIIGVLVTAGVPYLQNYLVRARVVEGLGAAASAKALVSENAMHGAPFNSGWQAP
SATDNVNAVTIDSVSGNVTVAYTQRAGDGALVLVPTSAGPDGKPMALTVGKAPEGQIVWTCYAQGREGAPGGATLPAKLA
PPECRGAATQRGA
Nucleotide
Download Length: 522 bp
>NTDB_id=63799 U875_RS02645 WP_023594269.1 582400..582921(+) (pilA) [Pandoraea pnomenusa 3kgm]
ATGCGTCGTTTCGGCCACCGGACCACCGGTCTCGCCAAATCCCGGGGATTCACCCTGATCGAGCTGATGATCGTGCTGGC
GATCATCGGCGTGTTGGTCACGGCAGGGGTTCCGTATCTGCAAAACTATCTGGTGCGTGCGCGTGTCGTCGAGGGACTGG
GCGCGGCCGCGTCGGCCAAGGCGCTCGTGAGCGAGAACGCCATGCACGGCGCCCCGTTCAATAGCGGTTGGCAAGCGCCG
AGTGCGACCGACAACGTGAACGCCGTGACCATCGACTCGGTGAGCGGCAACGTCACGGTCGCCTACACCCAGCGCGCTGG
CGACGGTGCTCTGGTGCTGGTGCCCACGAGCGCCGGTCCCGACGGCAAGCCCATGGCGCTGACGGTCGGCAAGGCGCCTG
AAGGCCAGATCGTATGGACGTGTTACGCACAAGGTCGCGAGGGCGCACCCGGCGGTGCCACGCTGCCCGCGAAGCTCGCG
CCTCCCGAGTGCCGTGGCGCGGCGACCCAGCGGGGCGCCTGA
ATGCGTCGTTTCGGCCACCGGACCACCGGTCTCGCCAAATCCCGGGGATTCACCCTGATCGAGCTGATGATCGTGCTGGC
GATCATCGGCGTGTTGGTCACGGCAGGGGTTCCGTATCTGCAAAACTATCTGGTGCGTGCGCGTGTCGTCGAGGGACTGG
GCGCGGCCGCGTCGGCCAAGGCGCTCGTGAGCGAGAACGCCATGCACGGCGCCCCGTTCAATAGCGGTTGGCAAGCGCCG
AGTGCGACCGACAACGTGAACGCCGTGACCATCGACTCGGTGAGCGGCAACGTCACGGTCGCCTACACCCAGCGCGCTGG
CGACGGTGCTCTGGTGCTGGTGCCCACGAGCGCCGGTCCCGACGGCAAGCCCATGGCGCTGACGGTCGGCAAGGCGCCTG
AAGGCCAGATCGTATGGACGTGTTACGCACAAGGTCGCGAGGGCGCACCCGGCGGTGCCACGCTGCCCGCGAAGCTCGCG
CCTCCCGAGTGCCGTGGCGCGGCGACCCAGCGGGGCGCCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Ralstonia pseudosolanacearum GMI1000 |
48 |
100 |
0.486 |
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
34.375 |
100 |
0.382 |
| pilA2 | Legionella pneumophila str. Paris |
39.873 |
91.329 |
0.364 |