Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   LUA14_RS13865 Genome accession   NZ_CP089530
Coordinates   2760240..2761007 (-) Length   255 a.a.
NCBI ID   WP_015240232.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain LS1-002-014s     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2755240..2766007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUA14_RS13845 (LUA14_13845) - 2755442..2756254 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  LUA14_RS13850 (LUA14_13850) ccpN 2756280..2756918 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  LUA14_RS13855 (LUA14_13855) glyS 2757019..2759058 (-) 2040 WP_059368104.1 glycine--tRNA ligase subunit beta -
  LUA14_RS13860 (LUA14_13860) glyQ 2759051..2759938 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  LUA14_RS13865 (LUA14_13865) recO 2760240..2761007 (-) 768 WP_015240232.1 DNA repair protein RecO Machinery gene
  LUA14_RS13870 (LUA14_13870) - 2761044..2761187 (-) 144 WP_007408286.1 YqzL family protein -
  LUA14_RS13875 (LUA14_13875) era 2761342..2762247 (-) 906 WP_007408285.1 GTPase Era -
  LUA14_RS13880 (LUA14_13880) - 2762228..2762638 (-) 411 WP_003152976.1 cytidine deaminase -
  LUA14_RS13885 (LUA14_13885) - 2762762..2763136 (-) 375 WP_015240233.1 diacylglycerol kinase family protein -
  LUA14_RS13890 (LUA14_13890) ybeY 2763117..2763590 (-) 474 WP_012118016.1 rRNA maturation RNase YbeY -
  LUA14_RS13895 (LUA14_13895) - 2763591..2765723 (-) 2133 WP_007408284.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29294.89 Da        Isoelectric Point: 8.7092

>NTDB_id=637985 LUA14_RS13865 WP_015240232.1 2760240..2761007(-) (recO) [Bacillus amyloliquefaciens strain LS1-002-014s]
MLTKSEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPMSPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=637985 LUA14_RS13865 WP_015240232.1 2760240..2761007(-) (recO) [Bacillus amyloliquefaciens strain LS1-002-014s]
ATGCTGACTAAAAGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATGTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACGGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

88.235

100

0.882