Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   LUA14_RS07715 Genome accession   NZ_CP089530
Coordinates   1451428..1451712 (+) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain LS1-002-014s     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1446428..1456712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUA14_RS07695 (LUA14_07695) - 1447671..1448579 (+) 909 WP_218791616.1 ketopantoate reductase family protein -
  LUA14_RS07700 (LUA14_07700) - 1448611..1449843 (-) 1233 WP_007409644.1 aminopeptidase -
  LUA14_RS07705 (LUA14_07705) - 1449944..1450078 (-) 135 WP_003154559.1 protein YkpC -
  LUA14_RS07710 (LUA14_07710) mreBH 1450150..1451157 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  LUA14_RS07715 (LUA14_07715) abrB 1451428..1451712 (+) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  LUA14_RS07720 (LUA14_07720) - 1451885..1453189 (+) 1305 WP_007409646.1 ATP-binding protein -
  LUA14_RS07725 (LUA14_07725) - 1453191..1454018 (+) 828 WP_015239773.1 gamma-glutamylcyclotransferase -
  LUA14_RS07730 (LUA14_07730) ktrC 1454059..1454724 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  LUA14_RS07735 (LUA14_07735) ade 1454873..1456606 (+) 1734 WP_043021212.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=637969 LUA14_RS07715 WP_003154557.1 1451428..1451712(+) (abrB) [Bacillus amyloliquefaciens strain LS1-002-014s]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=637969 LUA14_RS07715 WP_003154557.1 1451428..1451712(+) (abrB) [Bacillus amyloliquefaciens strain LS1-002-014s]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTTGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACTCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543