Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   LUA14_RS07605 Genome accession   NZ_CP089530
Coordinates   1430928..1431524 (+) Length   198 a.a.
NCBI ID   WP_012117447.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain LS1-002-014s     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1425928..1436524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUA14_RS07575 (LUA14_07575) - 1426142..1426597 (+) 456 WP_124693069.1 flavodoxin -
  LUA14_RS07580 (LUA14_07580) dapD 1426679..1427389 (+) 711 WP_012117443.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  LUA14_RS07585 (LUA14_07585) - 1427460..1428584 (+) 1125 WP_046702332.1 N-acetyldiaminopimelate deacetylase -
  LUA14_RS07590 (LUA14_07590) - 1428645..1428890 (+) 246 WP_003154596.1 YkuS family protein -
  LUA14_RS07595 (LUA14_07595) - 1428924..1429730 (-) 807 WP_218791613.1 mechanosensitive ion channel family protein -
  LUA14_RS07600 (LUA14_07600) - 1430017..1430475 (+) 459 WP_095353001.1 TlpA disulfide reductase family protein -
  LUA14_RS07605 (LUA14_07605) rok 1430928..1431524 (+) 597 WP_012117447.1 transcriptional regulator Rok Regulator
  LUA14_RS07610 (LUA14_07610) - 1431545..1432537 (-) 993 WP_043021218.1 hypothetical protein -
  LUA14_RS07615 (LUA14_07615) - 1432683..1433285 (+) 603 WP_025284661.1 molybdenum cofactor guanylyltransferase -
  LUA14_RS07620 (LUA14_07620) - 1433337..1434356 (+) 1020 WP_007611113.1 molybdopterin-synthase adenylyltransferase MoeB -
  LUA14_RS07625 (LUA14_07625) glp 1434374..1435666 (+) 1293 WP_069007530.1 gephyrin-like molybdotransferase Glp -
  LUA14_RS07630 (LUA14_07630) mobB 1435627..1436148 (+) 522 WP_007409631.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22495.54 Da        Isoelectric Point: 9.6909

>NTDB_id=637968 LUA14_RS07605 WP_012117447.1 1430928..1431524(+) (rok) [Bacillus amyloliquefaciens strain LS1-002-014s]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
AQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=637968 LUA14_RS07605 WP_012117447.1 1430928..1431524(+) (rok) [Bacillus amyloliquefaciens strain LS1-002-014s]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
GCACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATTAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843