Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   LUA14_RS05420 Genome accession   NZ_CP089530
Coordinates   1046440..1047018 (+) Length   192 a.a.
NCBI ID   WP_012117234.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain LS1-002-014s     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1041440..1052018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUA14_RS21540 - 1041942..1042457 (-) 516 WP_370529535.1 methyl-accepting chemotaxis protein -
  LUA14_RS21545 - 1042749..1043123 (-) 375 Protein_1000 protoglobin domain-containing protein -
  LUA14_RS05405 (LUA14_05405) - 1043356..1044879 (-) 1524 WP_032866166.1 FAD-dependent oxidoreductase -
  LUA14_RS05410 (LUA14_05410) - 1045004..1045861 (+) 858 WP_032871127.1 SDR family oxidoreductase -
  LUA14_RS05415 (LUA14_05415) - 1045891..1046124 (-) 234 WP_007409189.1 IDEAL domain-containing protein -
  LUA14_RS05420 (LUA14_05420) comK 1046440..1047018 (+) 579 WP_012117234.1 competence protein ComK Regulator
  LUA14_RS05425 (LUA14_05425) - 1047146..1047331 (+) 186 WP_072588961.1 hypothetical protein -
  LUA14_RS05430 (LUA14_05430) - 1047335..1048711 (+) 1377 WP_072588962.1 hypothetical protein -
  LUA14_RS05435 (LUA14_05435) - 1049358..1049726 (+) 369 WP_012117235.1 iron chaperone -
  LUA14_RS05440 (LUA14_05440) - 1049753..1050124 (+) 372 WP_015239528.1 iron chaperone -
  LUA14_RS05445 (LUA14_05445) - 1050247..1050756 (+) 510 WP_015239529.1 MepB family protein -
  LUA14_RS05450 (LUA14_05450) - 1050985..1051695 (-) 711 WP_015239530.1 YrpD family protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22301.55 Da        Isoelectric Point: 8.1419

>NTDB_id=637956 LUA14_RS05420 WP_012117234.1 1046440..1047018(+) (comK) [Bacillus amyloliquefaciens strain LS1-002-014s]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HVPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=637956 LUA14_RS05420 WP_012117234.1 1046440..1047018(+) (comK) [Bacillus amyloliquefaciens strain LS1-002-014s]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCTCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCGGTCACGTTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATGTCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.812

100

0.828