Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   LUA14_RS01760 Genome accession   NZ_CP089530
Coordinates   329019..329417 (-) Length   132 a.a.
NCBI ID   WP_218791481.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain LS1-002-014s     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 324019..334417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUA14_RS01735 (LUA14_01735) - 324190..325392 (+) 1203 WP_012116765.1 GTP-binding protein -
  LUA14_RS01740 (LUA14_01740) - 325457..326593 (+) 1137 WP_025284207.1 zinc-dependent alcohol dehydrogenase -
  LUA14_RS01745 (LUA14_01745) - 326608..327042 (+) 435 WP_059366555.1 RDD family protein -
  LUA14_RS01750 (LUA14_01750) - 327160..327438 (+) 279 WP_263612330.1 YckD family protein -
  LUA14_RS01755 (LUA14_01755) - 327542..328978 (+) 1437 WP_072588782.1 glycoside hydrolase family 1 protein -
  LUA14_RS01760 (LUA14_01760) nin/comJ 329019..329417 (-) 399 WP_218791481.1 competence protein ComJ Regulator
  LUA14_RS01765 (LUA14_01765) nucA/comI 329438..329875 (-) 438 WP_218791482.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  LUA14_RS01770 (LUA14_01770) hxlB 330232..330789 (-) 558 WP_007409354.1 6-phospho-3-hexuloisomerase -
  LUA14_RS01775 (LUA14_01775) hxlA 330786..331421 (-) 636 WP_012116769.1 3-hexulose-6-phosphate synthase -
  LUA14_RS01780 (LUA14_01780) - 331653..332015 (+) 363 WP_012116770.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14893.85 Da        Isoelectric Point: 4.9597

>NTDB_id=637945 LUA14_RS01760 WP_218791481.1 329019..329417(-) (nin/comJ) [Bacillus amyloliquefaciens strain LS1-002-014s]
MNKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLSFNIPKGRYSLTCYSVPAEISDLHADTYIINAAAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=637945 LUA14_RS01760 WP_218791481.1 329019..329417(-) (nin/comJ) [Bacillus amyloliquefaciens strain LS1-002-014s]
TTGAATAAATCATGGAAACCGCAAGAACTGGCCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTTGAGGCAAGGAGAA
ATACGAGGGCATTTATCGTTCTCAGGCTTAACACAAGTGAACCGGTACCATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTCTTTTAATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTAATGCAGCCGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

75

100

0.75