Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LUU92_RS24995 Genome accession   NZ_CP089519
Coordinates   5529857..5531224 (-) Length   455 a.a.
NCBI ID   WP_049711449.1    Uniprot ID   A0A1H0R2Z6
Organism   Pseudomonas extremorientalis strain 1502IPR-01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5524857..5536224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUU92_RS24970 (LUU92_24920) yjiA 5525192..5526151 (-) 960 WP_071489962.1 GTPase -
  LUU92_RS24975 (LUU92_24925) - 5526289..5526486 (-) 198 WP_003194308.1 YbdD/YjiX family protein -
  LUU92_RS24980 (LUU92_24930) - 5526502..5528568 (-) 2067 WP_058427703.1 carbon starvation CstA family protein -
  LUU92_RS24985 (LUU92_24935) - 5528743..5529111 (+) 369 WP_257102790.1 PilZ domain-containing protein -
  LUU92_RS24990 (LUU92_24940) - 5529116..5529841 (-) 726 WP_071490029.1 hypothetical protein -
  LUU92_RS24995 (LUU92_24945) radA 5529857..5531224 (-) 1368 WP_049711449.1 DNA repair protein RadA Machinery gene
  LUU92_RS25000 (LUU92_24950) - 5531260..5531799 (-) 540 WP_257102791.1 ankyrin repeat domain-containing protein -
  LUU92_RS25005 (LUU92_24955) katB 5531858..5533399 (-) 1542 WP_071489959.1 catalase KatB -
  LUU92_RS25010 (LUU92_24960) mscL 5533687..5534103 (+) 417 WP_071489958.1 large-conductance mechanosensitive channel protein MscL -
  LUU92_RS25015 (LUU92_24965) - 5534147..5534923 (-) 777 WP_257102792.1 ferredoxin--NADP reductase -
  LUU92_RS25020 (LUU92_24970) - 5535304..5536014 (+) 711 WP_257102793.1 autoinducer binding domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48759.23 Da        Isoelectric Point: 6.8987

>NTDB_id=637924 LUU92_RS24995 WP_049711449.1 5529857..5531224(-) (radA) [Pseudomonas extremorientalis strain 1502IPR-01]
MAKAKRMYGCTECGATFPKWAGQCSECGAWNTLTETMIESGGAAAPTGRAGWTGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA
TARIEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKESPPGIQIIGVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=637924 LUU92_RS24995 WP_049711449.1 5529857..5531224(-) (radA) [Pseudomonas extremorientalis strain 1502IPR-01]
ATGGCAAAGGCCAAGCGCATGTACGGCTGCACGGAGTGCGGCGCGACCTTTCCCAAGTGGGCCGGCCAGTGCTCCGAGTG
CGGTGCGTGGAACACCCTGACTGAAACCATGATTGAGAGTGGCGGTGCGGCGGCCCCCACCGGTCGCGCTGGCTGGACCG
GGCAGCAGGCGCAGATCAAGACCCTGGCTGAAGTCAGCGTCGAAGAGATCCCGCGTTTTTCCACGGCATCCGGCGAATTG
GACCGCGTGCTGGGCGGCGGCCTGGTGGACGGCTCGGTGGTGCTGATCGGCGGCGACCCGGGCATCGGAAAGTCGACGAT
TTTGCTGCAAACCCTGTGCAGCATCGCCAGCCGCATGCCGGCGCTGTACGTCACCGGCGAAGAATCCCAGCAACAAGTGG
CCATGCGCGCCCGCCGCCTGGGGTTGCCCCAGGATCAGCTGCGGGTCATGACCGAGACCTGCATCGAAAGCATCATTGCC
ACGGCCCGTATCGAAAAGCCCAAGGTCATGGTGATCGACTCGATCCAGACCATTTTCACCGAGCAGTTGCAATCGGCGCC
GGGCGGCGTGTCCCAGGTGCGCGAGAGTGCGGCGCTGCTGGTGCGGTATGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TCGGCCACGTCACCAAGGAAGGCGCGCTGGCCGGGCCTCGGGTGCTCGAGCATATGGTCGACACGGTGCTGTATTTCGAG
GGCGAGTCCGATGGTCGCCTGCGCTTGCTGCGGGCGGTGAAGAACCGCTTCGGGGCGGTGAACGAGTTGGGTGTATTCGC
CATGACCGACCGGGGGCTGAAAGAAGTCTCCAACCCATCAGCGATTTTCCTGACGCGTGCCCAGGAAGAAGTCCCAGGCA
GTGTGGTGATGGCAACGTGGGAAGGCACCCGGCCGATGCTGGTGGAAGTGCAGGCGTTGGTGGATGACAGCCACCTGGCC
AACCCGCGCCGCGTGACCCTGGGCCTGGACCAGAACCGCCTGGCGATGCTGTTGGCGGTCCTGCACCGCCACGGTGGCAT
CCCGACCCATGACCAGGACGTGTTCCTCAACGTGGTCGGCGGGGTCAAGGTGCTGGAGACCGCCTCCGACCTGGCGTTGA
TGGCGGCAGTCATGTCCAGCCTGCGTAACCGGCCATTGCCCCATGACCTGCTGGTGTTTGGTGAAGTCGGTTTGTCCGGT
GAAGTTCGCCCGGTGCCCAGCGGCCAGGAGCGCTTGAAGGAAGCGGCCAAGCATGGTTTCAAGCGCGCCATCGTGCCCAA
GGGCAACGCACCGAAGGAATCGCCGCCCGGGATACAGATTATTGGGGTGACCCGCCTGGAGCAGGCACTGGATGCACTTT
TCGAGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H0R2Z6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.672

100

0.499
  radA Streptococcus mitis SK321

47.149

100

0.473
  radA Streptococcus mitis NCTC 12261

46.93

100

0.47
  radA Streptococcus pneumoniae Rx1

46.93

100

0.47
  radA Streptococcus pneumoniae D39

46.93

100

0.47
  radA Streptococcus pneumoniae R6

46.93

100

0.47
  radA Streptococcus pneumoniae TIGR4

46.93

100

0.47