Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   LUS72_RS21285 Genome accession   NZ_CP089518
Coordinates   4097134..4097880 (-) Length   248 a.a.
NCBI ID   WP_000487006.1    Uniprot ID   A0A2C1PEK7
Organism   Bacillus cereus strain PT1     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 4092134..4102880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUS72_RS21265 dnaG 4092889..4094685 (-) 1797 WP_097830659.1 DNA primase -
  LUS72_RS21270 - 4094799..4094912 (-) 114 WP_097830658.1 hypothetical protein -
  LUS72_RS21275 - 4095553..4096365 (-) 813 WP_071747361.1 pyruvate, water dikinase regulatory protein -
  LUS72_RS21280 - 4096395..4097027 (-) 633 WP_083596090.1 helix-turn-helix transcriptional regulator -
  LUS72_RS21285 recO 4097134..4097880 (-) 747 WP_000487006.1 DNA repair protein RecO Machinery gene
  LUS72_RS21290 - 4097914..4098057 (-) 144 WP_000883924.1 YqzL family protein -
  LUS72_RS21295 era 4098234..4099139 (-) 906 WP_001080239.1 GTPase Era -
  LUS72_RS21300 - 4099132..4099530 (-) 399 WP_097830657.1 cytidine deaminase -
  LUS72_RS21305 - 4099630..4099983 (-) 354 WP_000715486.1 diacylglycerol kinase family protein -
  LUS72_RS21310 ybeY 4099980..4100450 (-) 471 WP_000054678.1 rRNA maturation RNase YbeY -
  LUS72_RS21315 - 4100447..4102591 (-) 2145 WP_097830656.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28614.12 Da        Isoelectric Point: 8.0488

>NTDB_id=637892 LUS72_RS21285 WP_000487006.1 4097134..4097880(-) (recO) [Bacillus cereus strain PT1]
MFQKVEGIVIRTTDYGETNKIVTIFSREFGKVSAMARGAKKPKSRLAAVSQLMTHGHFLIQIGSGLGTLQQGEIISSMKE
IREDIFLTAYASFIIELTDKATEDKKNNPYLFEMLYQTLHYMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDQYRIPVGEAVHKLLRLFFHFDLHRLGNVSVKDSTKKQMRTVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=637892 LUS72_RS21285 WP_000487006.1 4097134..4097880(-) (recO) [Bacillus cereus strain PT1]
ATGTTTCAAAAAGTTGAGGGCATTGTTATCCGTACGACAGATTACGGAGAAACGAACAAGATTGTTACAATATTCTCACG
GGAATTTGGTAAGGTAAGTGCAATGGCAAGAGGGGCGAAAAAACCGAAGAGTCGGTTAGCAGCTGTTTCGCAACTTATGA
CACATGGTCATTTTCTTATTCAAATAGGATCTGGACTTGGAACTTTGCAACAAGGCGAGATCATTTCATCTATGAAAGAA
ATTCGTGAGGATATATTTTTAACTGCTTATGCATCATTTATTATTGAATTAACTGATAAAGCAACAGAAGATAAGAAGAA
TAATCCATATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGACCCTGAAGTATTATCATTAA
TTTATCAAACGAAAATGCTTCCGGTATTAGGGATGCGCCCGTACTTTGATACATGTGCTATTTGTCATCAAGAAACAGAT
TTTGTCGCCTTCTCTGTTCGGGAAGGCGGTTTTCTGTGCTCGCGTCATGCAGAGCAAGATCAGTATCGTATTCCGGTGGG
AGAGGCTGTTCATAAATTATTACGTCTCTTTTTTCACTTCGATCTACACCGGCTCGGTAATGTATCGGTAAAGGATAGTA
CAAAAAAACAAATGCGCACAGTATTGAATACATATTATGATGAATATTGTGGGATTTATTTGAAATCAAGGCGTTTCTTA
GAACAACTTGATAAATTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-238)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2C1PEK7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.87

99.597

0.556