Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   LUS72_RS19845 Genome accession   NZ_CP089518
Coordinates   3842252..3842686 (-) Length   144 a.a.
NCBI ID   WP_000811509.1    Uniprot ID   A0AA44KTQ4
Organism   Bacillus cereus strain PT1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3837252..3847686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUS72_RS19825 - 3837650..3838207 (+) 558 WP_097830857.1 PadR family transcriptional regulator -
  LUS72_RS19830 - 3838421..3838852 (-) 432 WP_071746900.1 NUDIX hydrolase -
  LUS72_RS19835 metE 3839501..3841789 (+) 2289 WP_097830856.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  LUS72_RS19840 comJ 3841827..3842216 (-) 390 WP_097830855.1 competence protein ComJ -
  LUS72_RS19845 nucA/comI 3842252..3842686 (-) 435 WP_000811509.1 DNA-entry nuclease Machinery gene
  LUS72_RS19850 - 3842923..3843672 (+) 750 WP_097830854.1 DUF3967 domain-containing protein -
  LUS72_RS19855 - 3843731..3845005 (-) 1275 WP_097830853.1 sensor histidine kinase -
  LUS72_RS19860 - 3845315..3845515 (+) 201 WP_000929279.1 hypothetical protein -
  LUS72_RS19865 - 3845633..3846796 (+) 1164 WP_098361632.1 aminotransferase A -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16130.54 Da        Isoelectric Point: 8.4331

>NTDB_id=637888 LUS72_RS19845 WP_000811509.1 3842252..3842686(-) (nucA/comI) [Bacillus cereus strain PT1]
MKQLKGIIISIIAILSLLVAVYEVLVPEETSTKKTTTYDQILEFPKERYPETGKHIADAIKEGHSEMCTIDRNGAADRRK
LSLAPYPTKKGYDRDEWPMAMCKEGGKGAHIEYISPADNRGAGSWVGNKLDKYPDGTRVKFEVK

Nucleotide


Download         Length: 435 bp        

>NTDB_id=637888 LUS72_RS19845 WP_000811509.1 3842252..3842686(-) (nucA/comI) [Bacillus cereus strain PT1]
ATGAAGCAATTAAAAGGTATTATCATTTCAATTATTGCAATTCTTTCTCTTTTGGTAGCAGTATATGAAGTACTTGTGCC
AGAGGAGACAAGTACTAAAAAAACAACTACGTATGATCAAATTTTAGAGTTCCCGAAAGAACGATATCCAGAGACCGGGA
AACATATAGCGGATGCTATAAAAGAAGGGCATTCAGAAATGTGTACAATTGATCGTAATGGTGCAGCGGATAGAAGGAAA
TTATCGTTAGCGCCATATCCGACGAAGAAAGGTTATGATCGCGATGAATGGCCGATGGCGATGTGTAAGGAAGGCGGAAA
AGGAGCTCATATTGAATATATAAGTCCAGCAGATAACCGCGGTGCAGGTTCTTGGGTAGGGAATAAGCTAGACAAATATC
CAGATGGTACGCGTGTGAAATTTGAAGTGAAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(47-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

69.027

78.472

0.542