Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   LUS72_RS15085 Genome accession   NZ_CP089518
Coordinates   2904839..2905117 (-) Length   92 a.a.
NCBI ID   WP_000648339.1    Uniprot ID   J8DDC5
Organism   Bacillus cereus strain PT1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2899839..2910117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUS72_RS15055 - 2900654..2901093 (-) 440 Protein_2894 IS6 family transposase -
  LUS72_RS15060 - 2901165..2901905 (-) 741 WP_264446919.1 YrrS family protein -
  LUS72_RS15065 - 2902142..2902484 (-) 343 Protein_2896 sodium:proton symporter -
  LUS72_RS15070 - 2903163..2903729 (+) 567 WP_097830190.1 helix-turn-helix domain-containing protein -
  LUS72_RS15075 - 2903719..2904186 (+) 468 WP_097830191.1 hypothetical protein -
  LUS72_RS15080 - 2904348..2904575 (+) 228 WP_097830192.1 hypothetical protein -
  LUS72_RS15085 abrB 2904839..2905117 (-) 279 WP_000648339.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  LUS72_RS15090 - 2905492..2905587 (-) 96 Protein_2901 IS6 family transposase -
  LUS72_RS15095 - 2905616..2905750 (-) 135 Protein_2902 sporulation protein YhbH -
  LUS72_RS15100 - 2906238..2906438 (+) 201 WP_264446932.1 hypothetical protein -
  LUS72_RS15105 - 2906764..2907009 (-) 246 WP_097830194.1 DUF3947 family protein -
  LUS72_RS15110 - 2907142..2907870 (-) 729 WP_097830195.1 hypothetical protein -
  LUS72_RS15115 - 2907886..2908995 (-) 1110 WP_097830196.1 DUF58 domain-containing protein -
  LUS72_RS15120 - 2908992..2909924 (-) 933 WP_097830197.1 AAA family ATPase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10049.70 Da        Isoelectric Point: 6.3325

>NTDB_id=637882 LUS72_RS15085 WP_000648339.1 2904839..2905117(-) (abrB) [Bacillus cereus strain PT1]
MKATGVTRKVDDLGRVVIPKELRNTLGIKEKSPLEIFVEGEDIVLQKYQPGGVCALTGEVSNRNISLANGKITLSPEGAE
LLIKEVEQYLVK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=637882 LUS72_RS15085 WP_000648339.1 2904839..2905117(-) (abrB) [Bacillus cereus strain PT1]
ATGAAAGCAACCGGAGTGACTAGAAAAGTAGATGATTTAGGGCGTGTGGTAATTCCAAAGGAACTTAGAAATACGCTAGG
TATTAAAGAAAAATCACCATTAGAGATCTTTGTAGAAGGTGAAGACATTGTTTTACAGAAATATCAGCCCGGTGGTGTTT
GTGCATTAACAGGAGAGGTATCAAATCGTAACATATCATTAGCAAACGGTAAGATAACATTAAGCCCAGAAGGTGCAGAA
CTATTAATAAAAGAAGTAGAACAGTACCTTGTAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)

AbrB C-terminal domain (AbrB_C)

(53-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J8DDC5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

60

97.826

0.587