Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   LUS72_RS09700 Genome accession   NZ_CP089518
Coordinates   1867702..1867989 (+) Length   95 a.a.
NCBI ID   WP_000648281.1    Uniprot ID   -
Organism   Bacillus cereus strain PT1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1862702..1872989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUS72_RS09680 - 1863878..1864030 (+) 153 WP_264448859.1 DUF4083 domain-containing protein -
  LUS72_RS09685 - 1864106..1864567 (+) 462 WP_097829776.1 NUDIX hydrolase -
  LUS72_RS09690 nadE 1864612..1865430 (-) 819 WP_097829775.1 ammonia-dependent NAD(+) synthetase -
  LUS72_RS09695 - 1865702..1867582 (+) 1881 WP_264448860.1 FtsX-like permease family protein -
  LUS72_RS09700 abrB 1867702..1867989 (+) 288 WP_000648281.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  LUS72_RS09705 - 1868325..1869275 (+) 951 WP_264448861.1 serine protease -
  LUS72_RS09710 - 1869388..1869489 (+) 102 Protein_1826 IS6 family transposase -
  LUS72_RS09715 - 1869504..1870607 (-) 1104 WP_264448862.1 ABC transporter ATP-binding protein -
  LUS72_RS09720 - 1870709..1871572 (-) 864 WP_097829771.1 PucR family transcriptional regulator -
  LUS72_RS09725 - 1871642..1872502 (-) 861 WP_097829770.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10662.43 Da        Isoelectric Point: 5.8623

>NTDB_id=637878 LUS72_RS09700 WP_000648281.1 1867702..1867989(+) (abrB) [Bacillus cereus strain PT1]
MKATGIIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSDQNISLANGNITVSIEGAK
HVIKEIEQFLKKSEI

Nucleotide


Download         Length: 288 bp        

>NTDB_id=637878 LUS72_RS09700 WP_000648281.1 1867702..1867989(+) (abrB) [Bacillus cereus strain PT1]
ATGAAAGCAACAGGAATTATTCGAAAAGTAGATGAATTGGGACGGATAGTTATTCCTAAAGAATTACGAGATGTATTAGG
AATACAAATCAAATCACCACTTGAAATTTTTGTAGAAGAAGATAAAGTTATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAGATCAAAATATTTCATTAGCAAATGGAAACATTACTGTTAGTATAGAAGGCGCAAAA
CATGTAATAAAAGAAATTGAGCAGTTTTTGAAAAAAAGTGAGATTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

57.143

95.789

0.547