Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LUS72_RS06050 Genome accession   NZ_CP089518
Coordinates   1183278..1185104 (+) Length   608 a.a.
NCBI ID   WP_097830037.1    Uniprot ID   -
Organism   Bacillus cereus strain PT1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1178278..1190104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUS72_RS06030 - 1178409..1179083 (-) 675 WP_071744644.1 TerC family protein -
  LUS72_RS06035 mecA 1179601..1180284 (+) 684 WP_000402127.1 adaptor protein MecA Regulator
  LUS72_RS06040 - 1180357..1181901 (+) 1545 WP_097830035.1 cardiolipin synthase -
  LUS72_RS06045 - 1181992..1183227 (+) 1236 WP_141533315.1 competence protein CoiA -
  LUS72_RS06050 pepF 1183278..1185104 (+) 1827 WP_097830037.1 oligoendopeptidase F Regulator
  LUS72_RS06055 - 1185251..1185424 (-) 174 WP_000748141.1 hypothetical protein -
  LUS72_RS06060 - 1185654..1186547 (-) 894 WP_097830038.1 ClpXP adapter SpxH family protein -
  LUS72_RS06065 - 1186547..1186945 (-) 399 WP_000043388.1 hypothetical protein -
  LUS72_RS06070 - 1187130..1187708 (-) 579 WP_097830039.1 CYTH domain-containing protein -
  LUS72_RS06075 - 1187853..1188224 (+) 372 WP_097830040.1 hypothetical protein -
  LUS72_RS06080 - 1188255..1188893 (+) 639 WP_097830041.1 GTP pyrophosphokinase -
  LUS72_RS06085 - 1188912..1189709 (+) 798 WP_000673196.1 NAD kinase -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 70350.62 Da        Isoelectric Point: 4.5624

>NTDB_id=637874 LUS72_RS06050 WP_097830037.1 1183278..1185104(+) (pepF) [Bacillus cereus strain PT1]
MAEQNTVKSLPDRNEIEEANTWRLEDIFQTDAEWEKEFQAIKELLPKLTEFKGKLGDSADNLLEALQYEDEISMRLGKLY
TYAHMRYDQDTTNSVYQALNDRATNLYSQVSSSTAYIVPEILSISEDTLETFLQENRELSVYEHALEEITRQRPHVLSEA
EEALLAEASEVMSASSNTFGMLNNADLKFPSIKGEDGEEVEITHGRYIQFLESDDRRVREDAFKAVYETYGKYKNTFAST
LSGAVKRNNFNARVRKYDSARQAALSNNNIPEAVYDQLVESVNDNLHLLHRYIDIRKRALGLDELHMYDLYTPLVPEVKM
NVKYEEAQEMLLKSLNVLGDEYVEILKEAYENRWVDVYENKGKRSGAYSSGAYGTNPYILMNWHDNVNNLFTLTHEFGHS
VHSYYTRKTQPHVYGDYSIFVAEVASTCNEALLNDYLLKTTEDKKERLYLLNHYLEGFRGTVFRQTMFAEFEHIIHKKVQ
EGHAVTPDMLTEIYYDLNKKYFGDALVIDEEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGQPAVERYINEF
LKAGSSDYPIEVLKKAGVDMASPEPVKEALQVFEEKLNELEALLFEEK

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=637874 LUS72_RS06050 WP_097830037.1 1183278..1185104(+) (pepF) [Bacillus cereus strain PT1]
ATGGCTGAACAAAACACAGTAAAATCATTACCAGATCGCAATGAGATTGAAGAAGCAAACACATGGCGATTAGAAGATAT
TTTCCAAACAGATGCAGAATGGGAAAAAGAATTCCAAGCTATTAAAGAGCTATTGCCAAAGTTAACTGAATTTAAAGGGA
AGCTTGGTGACTCTGCAGACAATTTGCTTGAGGCATTGCAATATGAAGATGAAATTTCAATGCGATTAGGTAAGCTATAT
ACATATGCACATATGCGTTACGATCAAGATACAACAAACTCTGTGTATCAAGCATTAAATGATCGCGCAACAAATTTATA
CTCACAAGTATCTAGTAGCACAGCTTATATCGTGCCTGAAATTTTATCTATTTCAGAAGATACATTGGAAACATTCTTAC
AAGAAAATCGAGAACTAAGTGTATATGAGCATGCATTAGAAGAAATTACACGTCAACGCCCGCATGTATTATCGGAAGCT
GAAGAAGCGTTATTAGCAGAAGCATCTGAAGTGATGAGTGCATCAAGTAATACATTTGGTATGTTGAATAATGCAGATTT
AAAATTTCCATCTATTAAAGGTGAAGATGGAGAAGAAGTAGAAATAACACATGGTCGTTATATTCAATTTTTAGAAAGTG
ATGATCGTCGTGTGCGCGAAGATGCATTCAAAGCTGTATATGAAACGTACGGAAAATATAAGAACACATTTGCAAGTACG
TTAAGTGGGGCTGTGAAACGTAATAATTTCAATGCCCGCGTTCGTAAATACGATTCTGCACGTCAAGCTGCATTAAGTAA
TAATAATATTCCTGAAGCGGTGTATGATCAACTTGTTGAATCGGTAAATGATAATTTACACTTACTACATCGCTATATTG
ATATTCGTAAGCGTGCCCTAGGTCTTGATGAGCTTCATATGTATGATTTATATACACCGCTTGTACCAGAAGTGAAAATG
AATGTGAAGTATGAAGAAGCACAAGAAATGTTATTGAAATCTTTAAATGTACTTGGTGATGAATATGTTGAAATTTTAAA
AGAAGCATATGAGAATCGCTGGGTAGATGTATATGAGAATAAAGGAAAACGAAGCGGAGCATATTCATCTGGTGCATACG
GAACAAATCCGTATATTTTAATGAACTGGCATGATAATGTAAATAATTTATTTACACTTACTCATGAGTTTGGCCATTCA
GTGCATAGTTACTATACAAGGAAGACACAGCCGCACGTATATGGTGATTATTCAATCTTCGTTGCAGAAGTAGCATCAAC
TTGTAATGAAGCGCTTCTAAATGATTACTTATTGAAAACGACAGAAGATAAGAAAGAGCGTCTATATTTATTAAATCACT
ATTTAGAAGGATTCCGCGGCACTGTATTCCGTCAAACGATGTTCGCAGAGTTTGAGCATATTATTCATAAGAAAGTACAA
GAAGGACATGCTGTTACGCCGGACATGTTAACGGAAATCTACTATGATTTAAATAAGAAATATTTCGGTGATGCTTTAGT
GATCGACGAAGAAATTGGTTTAGAGTGGTCTCGCATTCCGCATTTCTACTACAACTATTACGTATATCAATACGCAACAG
GATTTAGTGCAGCGACAGCTCTATCTAAACAAATTTTAGAAGAAGGGCAACCAGCAGTAGAACGTTACATTAACGAATTC
TTAAAAGCAGGAAGCTCTGATTATCCAATTGAAGTGCTGAAAAAAGCAGGAGTTGATATGGCATCTCCTGAACCTGTAAA
AGAAGCATTACAAGTATTTGAAGAGAAGTTAAATGAATTAGAAGCGTTATTGTTTGAAGAGAAGTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-591)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.253

97.533

0.49