Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   LUS72_RS00220 Genome accession   NZ_CP089518
Coordinates   40530..40814 (-) Length   94 a.a.
NCBI ID   WP_000843037.1    Uniprot ID   A0A366FUU6
Organism   Bacillus cereus strain PT1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 35530..45814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUS72_RS00185 tmk 35684..36310 (+) 627 WP_097832998.1 dTMP kinase -
  LUS72_RS00190 holB 36346..37329 (+) 984 WP_264448497.1 DNA polymerase III subunit delta' -
  LUS72_RS00195 - 37335..38162 (+) 828 WP_002107285.1 PSP1 domain-containing protein -
  LUS72_RS00200 yabA 38177..38527 (+) 351 WP_000412059.1 DNA replication initiation control protein YabA -
  LUS72_RS00205 - 38648..39388 (+) 741 WP_097832997.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  LUS72_RS00210 - 39375..39665 (+) 291 WP_016131051.1 GIY-YIG nuclease family protein -
  LUS72_RS00215 rsmI 39634..40509 (+) 876 WP_264448498.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  LUS72_RS00220 abrB 40530..40814 (-) 285 WP_000843037.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  LUS72_RS00225 metG 41182..43164 (+) 1983 WP_097832995.1 methionine--tRNA ligase -
  LUS72_RS00230 - 43332..44099 (+) 768 WP_097832994.1 TatD family hydrolase -
  LUS72_RS00235 rnmV 44360..44917 (+) 558 WP_000692835.1 ribonuclease M5 -
  LUS72_RS00240 rsmA 44914..45792 (+) 879 WP_097832993.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10476.14 Da        Isoelectric Point: 4.7174

>NTDB_id=637861 LUS72_RS00220 WP_000843037.1 40530..40814(-) (abrB) [Bacillus cereus strain PT1]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QVLNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=637861 LUS72_RS00220 WP_000843037.1 40530..40814(-) (abrB) [Bacillus cereus strain PT1]
ATGAAATCTACTGGTATCGTTCGTAAAGTTGATGAATTAGGTCGTGTGGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCTCTTGAAATCTACGTTGATGACGAGAAAATCATCTTAAAAAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGCAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAGTCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366FUU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

84.043

100

0.84