Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   LUS72_RS00020 Genome accession   NZ_CP089518
Coordinates   3123..4250 (+) Length   375 a.a.
NCBI ID   WP_097831347.1    Uniprot ID   A0A2A8U0N4
Organism   Bacillus cereus strain PT1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUS72_RS00005 dnaA 101..1441 (+) 1341 WP_097831348.1 chromosomal replication initiator protein DnaA -
  LUS72_RS00010 dnaN 1624..2769 (+) 1146 WP_071744229.1 DNA polymerase III subunit beta -
  LUS72_RS00015 yaaA 2898..3110 (+) 213 WP_000835828.1 S4 domain-containing protein YaaA -
  LUS72_RS00020 recF 3123..4250 (+) 1128 WP_097831347.1 DNA replication/repair protein RecF Machinery gene
  LUS72_RS00025 gyrB 4289..6211 (+) 1923 WP_097831346.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  LUS72_RS00030 gyrA 6300..8771 (+) 2472 WP_097831345.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43473.85 Da        Isoelectric Point: 6.7103

>NTDB_id=637859 LUS72_RS00020 WP_097831347.1 3123..4250(+) (recF) [Bacillus cereus strain PT1]
MFITEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDYGQIKGRLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGEMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPIYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGAKILRKRFEFLNLLQEWAAPIHRGISRGLEELEIVYKPSLDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKEAKTIHVMNGTVDCEMDRA

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=637859 LUS72_RS00020 WP_097831347.1 3123..4250(+) (recF) [Bacillus cereus strain PT1]
TTGTTTATTACAGAAATACAATTAAAAAACTATCGCAATTATGAAAAATTAGAGCTCTCCTTTGAGGACAAGGTCAATGT
AATTATTGGTGAAAATGCACAAGGGAAAACAAATTTGATGGAAGCCATTTATGTATTAGCGATGGCGAAATCTCATAGAA
CCTCTAATGATCGTGAGCTTATTCGATGGGATGAGGATTACGGTCAAATCAAAGGTAGATTACAAAAAAGAAATAGTTCT
TTGTCTTTAGAATTAAATATTTCCAAAAAAGGTAAAAAGGCAAAGCTAAATCAACTTGAACAACAAAAGTTAAGCCAATA
CATTGGTGAAATGAACGTTGTGATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAACTAGGACAAATAGCGCCCATTTATTTGTATGAACTAAGCCAATATCAAAAAGTGCTCACGCAACGA
AATCACTTGCTTAAAAAGATGCAAGGGAATAGTAAAAATGAGGAAACGATGTTGGATGTATTTACACTTCAACTCATTGA
GCATGGTGCAAAAATATTGCGAAAACGTTTTGAGTTTTTGAATTTACTACAAGAATGGGCTGCGCCGATACATCGCGGGA
TTAGCAGGGGATTAGAGGAATTAGAAATCGTCTATAAACCAAGCCTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCTGTGAAACAACGTGAAATTTTCCGTGGTACAACTTTAATTGGTCCTCATCG
TGATGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCGCAAGGACAACAACGAACGACCGCACTGT
CCCTAAAATTAGCTGAAATTGAATTGATTTACTCAGAAGTTAAGGAATATCCTATTCTTTTATTGGATGATGTATTATCA
GAATTAGATGATTATCGTCAATCACATCTGTTAAATACAATTCAAGGAAAAGTGCAAACATTTGTGACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTAAAAGAAGCGAAAACAATTCATGTAATGAACGGCACGGTAGATTGTGAAATGGACA
GGGCATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A8U0N4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

67.12

98.133

0.659