Detailed information NTG0637835

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: OCL44_RS02870
• Genome accession: NZ_CP106809
• Coordinates: 538464..541037 (-)
• Length: 857 a.a.
• NCBI ID: WP_263055867.1
• Uniprot ID: -
• Organism: Neisseria gonorrhoeae strain 10708
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 533464..546037

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCL44_RS02845 (OCL44_02845)	-	533498..534208 (-)	711	WP_106336913.1	phosphoglycolate phosphatase	-
OCL44_RS02850 (OCL44_02850)	-	534603..535822 (+)	1220	Protein_553	Glu/Leu/Phe/Val family dehydrogenase	-
OCL44_RS02855 (OCL44_02855)	-	535882..536688 (-)	807	WP_003690982.1	DUF4198 domain-containing protein	-
OCL44_RS02860 (OCL44_02860)	-	536880..537089 (+)	210	WP_003688192.1	4-oxalocrotonate tautomerase family protein	-
OCL44_RS02865 (OCL44_02865)	-	537178..538392 (+)	1215	WP_033910216.1	pyridoxal phosphate-dependent aminotransferase	-
OCL44_RS02870 (OCL44_02870)	clpC	538464..541037 (-)	2574	WP_263055867.1	ATP-dependent chaperone ClpB	Regulator
OCL44_RS02875 (OCL44_02875)	trpS	541297..542307 (+)	1011	WP_260236910.1	tryptophan--tRNA ligase	-
OCL44_RS02880 (OCL44_02880)	-	542388..542933 (+)	546	WP_260236911.1	hypothetical protein	-
OCL44_RS02885 (OCL44_02885)	-	543250..543594 (+)	345	WP_010360341.1	Ag473 family lipoprotein	-
OCL44_RS02890 (OCL44_02890)	ppx	543804..545312 (-)	1509	WP_003688205.1	exopolyphosphatase	-

Sequence

Protein

• Length: 857 a.a.
• Molecular weight: 94779.06 Da
• Isoelectric Point: 5.1970

>NTDB_id=637835 OCL44_RS02870 WP_263055867.1 538464..541037(-) (clpC) [Neisseria gonorrhoeae strain 10708]
MRYDKLTAKFQQALAEAQSLALAADSSYLEAGFVLKALLDDQNSGAAALLAHAGVNVPQVKQRLQQHLNSLPKVSGQGGE
ILPSRELQAVLNLMDKAATKRGDAYIASELFLLALVQQNDAAGKILKEAGATEQNINAAIDAVRGGQNVNDANAEDQRDA
LKKYTLDLTQRARDGKLDPVIGRDDEIRRAIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPESLRNKRLLVL
DLAALIAGAKYRGEFEERLKGVLNDLAKDDGNTLIFIDEIHTLVGAGKTDGAMDAGNMLKPALARGELHCIGATTLDEYR
QYIEKDAALERRFQKVLVGEPSVEDTIAILRGLQERYEIHHGIDITDPAIVAAAELSDRYITDRFLPDKAIDLIDEAASR
IKMELDSKPEQMDKLDRRIIQLKMEKMHVAKESDDASKKRLELIDEEIDGLQKEYADLDEIWKAEKAASSSTADIKKQMD
DIKVKIEQAKRQGDFARASELEYGELPKLGAQLQAAESNPDGKKQNKLFRTEVGADEVAEIVSRMTGIPVSKMMEGERDK
LLKMEEVLHRRVVGQNEAVRAVSDAIRRSRSGLADPNKPYGSFLFLGPTGVGKTELCKALAGFLFDSEDHLIRIDMSEYM
EKHAVARLIGAPPGYVGYEEGGYLTEQVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFKNTVIVMTS
NIGSQHIQQMGTQDYEAVKEVVMEDVKEHFRPEMINRIDEVVVFHGLDQANIRSIAKIQLKGLEKRLEKQNLRLTVSDAT
LDIIAKAGFDPIYGARPLKRAIQSEIENPLAKALLAGNYAPESEIKVEADGDRLKFA

Nucleotide

• Length: 2574 bp

>NTDB_id=637835 OCL44_RS02870 WP_263055867.1 538464..541037(-) (clpC) [Neisseria gonorrhoeae strain 10708]
ATGCGATACGACAAATTAACCGCCAAATTCCAACAAGCCCTTGCAGAAGCTCAGAGTTTGGCGTTGGCTGCGGACAGCAG
CTATCTGGAAGCAGGTTTCGTACTGAAAGCCCTGCTTGACGACCAAAACAGCGGAGCTGCCGCGCTCTTGGCTCATGCGG
GCGTGAACGTGCCGCAGGTTAAACAGCGTTTGCAGCAGCATTTGAACAGCCTGCCGAAAGTGTCCGGACAAGGTGGTGAG
ATTCTGCCCAGCCGCGAATTGCAGGCGGTGTTGAACCTGATGGACAAAGCGGCAACCAAACGCGGCGATGCCTATATCGC
CAGCGAACTTTTCCTGCTCGCCTTGGTGCAGCAGAACGATGCGGCCGGCAAAATCTTGAAAGAAGCCGGTGCGACCGAAC
AAAACATCAATGCCGCGATCGATGCGGTACGAGGCGGACAAAACGTGAACGATGCGAATGCCGAAGACCAACGCGATGCT
TTGAAAAAATACACGCTCGATCTGACCCAACGCGCCCGAGACGGTAAGCTCGACCCCGTTATCGGTCGTGATGATGAAAT
CCGCCGCGCGATTCAGGTGCTGCAACGCCGCACCAAAAACAACCCCGTGCTGATTGGCGAACCCGGTGTGGGTAAAACCG
CCATCGTCGAAGGTTTGGCGCAACGCATCGTCAACGGCGAAGTACCTGAATCCCTGCGTAACAAACGCCTGCTGGTTTTG
GATTTGGCGGCTTTGATTGCCGGTGCGAAATACCGTGGCGAATTTGAAGAACGCTTGAAAGGCGTATTGAACGATTTGGC
GAAAGACGACGGCAACACCCTGATTTTCATCGATGAAATCCATACTTTGGTCGGCGCGGGCAAAACCGACGGCGCGATGG
ACGCGGGCAATATGTTGAAACCGGCCTTGGCGCGGGGCGAACTGCACTGTATCGGTGCGACTACTTTGGACGAATACCGC
CAATACATCGAAAAAGACGCGGCACTCGAACGCCGTTTCCAAAAAGTATTGGTCGGCGAACCCAGCGTGGAAGACACCAT
CGCTATCCTGCGCGGTTTGCAGGAACGTTACGAAATCCACCACGGCATCGATATTACCGACCCTGCTATCGTTGCCGCAG
CGGAGTTGAGCGACCGCTACATTACCGACCGCTTTTTGCCCGACAAAGCGATTGATTTGATTGACGAAGCCGCCAGCCGC
ATCAAAATGGAGCTGGACAGCAAACCCGAACAGATGGACAAACTCGACCGCCGCATCATCCAGCTCAAAATGGAAAAAAT
GCACGTTGCCAAAGAAAGCGATGATGCCAGCAAAAAACGTTTGGAACTGATAGACGAAGAAATCGACGGCCTGCAAAAAG
AATACGCCGATTTGGACGAAATCTGGAAAGCCGAAAAAGCCGCGTCTTCCAGCACTGCCGACATCAAGAAACAAATGGAC
GACATCAAAGTCAAAATCGAACAAGCCAAACGTCAAGGCGACTTCGCCCGCGCGTCCGAACTCGAATACGGCGAGTTGCC
GAAATTGGGCGCACAGTTGCAGGCAGCGGAAAGCAACCCCGACGGCAAAAAACAAAACAAACTTTTCCGTACCGAAGTCG
GCGCGGATGAAGTGGCCGAAATCGTTTCCCGTATGACCGGCATTCCCGTATCCAAAATGATGGAAGGCGAACGCGATAAA
TTGTTGAAAATGGAAGAAGTGTTGCACCGCCGCGTAGTCGGTCAAAACGAAGCCGTGCGCGCCGTGTCCGATGCCATCCG
CCGCAGCCGCTCCGGCCTTGCCGATCCGAACAAACCTTACGGCAGCTTCCTGTTCTTAGGCCCGACCGGTGTGGGTAAGA
CCGAGTTGTGCAAAGCTTTGGCAGGCTTCCTGTTCGACAGCGAAGACCACCTCATCCGCATCGACATGTCCGAATACATG
GAAAAACACGCCGTTGCCCGCTTAATCGGCGCGCCTCCGGGTTATGTCGGATACGAAGAGGGCGGCTACCTGACCGAACA
AGTCCGCCGCAAACCGTACAGCGTGATTCTTTTGGACGAAGTGGAAAAAGCCCATCCCGACGTATTCAACATCCTGCTGC
AAGTATTGGATGACGGTCGTTTGACCGACGGACAAGGCAGGACGGTAGATTTTAAAAATACCGTGATTGTGATGACTTCC
AACATCGGCAGCCAGCACATCCAACAAATGGGCACGCAGGACTACGAAGCGGTGAAAGAAGTTGTGATGGAGGATGTGAA
AGAACATTTCCGTCCGGAAATGATCAACCGCATCGACGAAGTGGTCGTGTTCCATGGCTTGGATCAGGCCAATATCCGCA
GTATTGCGAAAATCCAGCTCAAAGGTTTGGAAAAACGTTTGGAAAAACAAAACCTGCGCCTGACTGTTTCCGATGCCACT
CTGGACATCATCGCCAAAGCCGGTTTCGACCCGATTTACGGCGCACGTCCGCTCAAACGCGCGATCCAATCAGAAATCGA
AAACCCGCTGGCCAAAGCCCTGCTTGCCGGAAACTATGCGCCCGAAAGCGAAATCAAAGTAGAAGCCGACGGCGACAGAC
TGAAATTTGCCTGA

Domains

Predicted by InterProScan.

• Clp amino terminal domain, pathogenicity island component (Clp_N) (96-145)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-68)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (767-847)

• ATPase family associated with various cellular activities (AAA) (AAA) (203-336)

• AAA domain (Cdc48 subfamily) (AAA_2) (599-761)

• AAA lid domain (AAA_lid_9) (342-442)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	43.721	100	0.439
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	38.418	100	0.397
clpC	Lactococcus lactis subsp. cremoris KW2	44.524	80.98	0.361