Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   OCL44_RS02375 Genome accession   NZ_CP106809
Coordinates   453069..454037 (+) Length   322 a.a.
NCBI ID   WP_260236889.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10708     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 448069..459037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCL44_RS02350 (OCL44_02350) - 448573..449082 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  OCL44_RS02355 (OCL44_02355) - 449312..449893 (-) 582 WP_003701053.1 superoxide dismutase -
  OCL44_RS02360 (OCL44_02360) dnaB 450056..451462 (+) 1407 WP_241532347.1 replicative DNA helicase -
  OCL44_RS02365 (OCL44_02365) pilH 451770..452435 (+) 666 WP_263055817.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  OCL44_RS02370 (OCL44_02370) pilV/pilI 452464..453072 (+) 609 WP_033910489.1 type IV pilus modification protein PilV Regulator
  OCL44_RS02375 (OCL44_02375) pilJ 453069..454037 (+) 969 WP_260236889.1 PilW family protein Machinery gene
  OCL44_RS02380 (OCL44_02380) pilK 454016..454624 (+) 609 WP_215318018.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  OCL44_RS02385 (OCL44_02385) pilL 454626..455099 (+) 474 WP_260237126.1 PilX family type IV pilin Machinery gene
  OCL44_RS02390 (OCL44_02390) - 455711..456156 (-) 446 Protein_464 AzlC family ABC transporter permease -
  OCL44_RS02395 (OCL44_02395) dut 456322..456774 (+) 453 WP_260236890.1 dUTP diphosphatase -
  OCL44_RS02400 (OCL44_02400) dapC 456852..458039 (+) 1188 WP_260236891.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35350.29 Da        Isoelectric Point: 9.1851

>NTDB_id=637831 OCL44_RS02375 WP_260236889.1 453069..454037(+) (pilJ) [Neisseria gonorrhoeae strain 10708]
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSVIVLIAVVSSYFTSRKLNDAANERLAIQQDLRNVATLIVRDARMAGSFG
CFNMSEHTKDDIVDSSNQTQSNPAKPGAKQENPLFSLKRSGMDKQLIPVAESTDIKYPGFTQRLNALVFQYGIDDLDASA
ETVVVSSCSKIAKPGKKISTLQEAKSALQITNDDKQNGNITRQKHVVNAYAVGMIAGEEGLFRFQLDDKGKWGNPQLLAK
KIKRMDVRYIYVSGCPEDEDAGKEEQFKYTDRFDRSVTPAGVEVLLDSGLNAKIAASSDNSIYAYRINATIRGGNVCANR
TL

Nucleotide


Download         Length: 969 bp        

>NTDB_id=637831 OCL44_RS02375 WP_260236889.1 453069..454037(+) (pilJ) [Neisseria gonorrhoeae strain 10708]
ATGAAACGTAAAATGCTAAACGTACCAAAGGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTGTGATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCATTCAACAGGATTTGCGGAATGTGGCAACATTAATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCCGAGCATACTAAAGACGATATTGTTGATTCAAGTAATCAAACTCAATCTAACCCTGCAAAACCCGG
TGCCAAACAAGAAAATCCCCTTTTTTCCTTAAAAAGGAGCGGCATGGATAAACAACTGATTCCCGTTGCTGAATCCACAG
ATATTAAATATCCGGGTTTTACCCAGCGCCTTAACGCATTGGTTTTCCAATACGGTATCGATGATCTTGATGCGAGTGCT
GAGACTGTTGTAGTCAGCAGCTGTTCCAAAATAGCAAAACCGGGTAAGAAAATATCTACCTTGCAAGAAGCAAAGAGTGC
ATTACAGATTACTAATGATGATAAACAAAATGGAAATATCACCCGTCAGAAACATGTGGTCAATGCCTATGCGGTCGGCA
TGATTGCCGGTGAGGAAGGTTTGTTCCGCTTCCAATTGGATGATAAGGGCAAGTGGGGTAATCCTCAGTTGCTCGCGAAA
AAGATTAAACGTATGGATGTGCGGTATATTTATGTTTCCGGTTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAACAATT
CAAATATACGGATAGATTCGACAGATCTGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGCCTTAATGCCAAGA
TTGCCGCTTCTTCAGACAATAGTATTTATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGA
ACACTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

78.462

100

0.792