Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   OCL44_RS02365 Genome accession   NZ_CP106809
Coordinates   451770..452435 (+) Length   221 a.a.
NCBI ID   WP_263055817.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10708     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 446770..457435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCL44_RS02340 (OCL44_02340) cysT 446865..447701 (-) 837 WP_260236887.1 sulfate ABC transporter permease subunit CysT -
  OCL44_RS02345 (OCL44_02345) - 447882..448214 (+) 333 WP_003687908.1 hypothetical protein -
  OCL44_RS02350 (OCL44_02350) - 448573..449082 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  OCL44_RS02355 (OCL44_02355) - 449312..449893 (-) 582 WP_003701053.1 superoxide dismutase -
  OCL44_RS02360 (OCL44_02360) dnaB 450056..451462 (+) 1407 WP_241532347.1 replicative DNA helicase -
  OCL44_RS02365 (OCL44_02365) pilH 451770..452435 (+) 666 WP_263055817.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  OCL44_RS02370 (OCL44_02370) pilV/pilI 452464..453072 (+) 609 WP_033910489.1 type IV pilus modification protein PilV Regulator
  OCL44_RS02375 (OCL44_02375) pilJ 453069..454037 (+) 969 WP_260236889.1 PilW family protein Machinery gene
  OCL44_RS02380 (OCL44_02380) pilK 454016..454624 (+) 609 WP_215318018.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  OCL44_RS02385 (OCL44_02385) pilL 454626..455099 (+) 474 WP_260237126.1 PilX family type IV pilin Machinery gene
  OCL44_RS02390 (OCL44_02390) - 455711..456156 (-) 446 Protein_464 AzlC family ABC transporter permease -
  OCL44_RS02395 (OCL44_02395) dut 456322..456774 (+) 453 WP_260236890.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24532.77 Da        Isoelectric Point: 9.1685

>NTDB_id=637829 OCL44_RS02365 WP_263055817.1 451770..452435(+) (pilH) [Neisseria gonorrhoeae strain 10708]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMSGWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYICPAQVKKDGASN
NRCDFSKKGWGMLAFGDKNDNKAYDGDATDVFLRSVVLNDTDDSRINYAFNHIAFGSSQPTADRVVWTFNQNGTFGYSSD
QDLKNNSKFVYSDGYIQIVLTDARAVSDADRKFRSAVVLINSSGRVEVCRKNDTRAVCKHQ

Nucleotide


Download         Length: 666 bp        

>NTDB_id=637829 OCL44_RS02365 WP_263055817.1 451770..452435(+) (pilH) [Neisseria gonorrhoeae strain 10708]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TTTCCAGGGGCGAAGCCGTTCGGCTCAATCTCCCTGTCTATATCTGTCCTGCCCAAGTTAAAAAAGACGGTGCGTCCAAC
AATAGATGTGACTTCAGCAAGAAGGGGTGGGGAATGTTGGCTTTCGGCGACAAAAACGACAATAAGGCATATGACGGCGA
TGCGACGGATGTTTTCCTCCGCAGCGTGGTGTTGAATGATACCGACGACAGCCGGATTAATTATGCCTTCAACCATATCG
CTTTCGGTTCGTCTCAGCCGACCGCCGACCGTGTAGTTTGGACGTTCAACCAAAACGGGACATTCGGCTATTCATCCGAT
CAGGATCTCAAGAATAATTCCAAATTTGTTTATTCTGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGTTTC
AGATGCCGATAGGAAATTCCGTTCGGCGGTGGTTTTGATTAACAGCAGCGGCAGGGTCGAAGTTTGTCGTAAAAACGATA
CGCGCGCCGTATGCAAACATCAATGA

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(44-204)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

94.545

99.548

0.941