Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LUZ01_RS07355 Genome accession   NZ_CP089504
Coordinates   1480648..1482012 (-) Length   454 a.a.
NCBI ID   WP_023487096.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 3581_IA_ST247     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1475648..1487012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUZ01_RS07340 cysE 1476469..1477116 (-) 648 WP_001805237.1 serine O-acetyltransferase -
  LUZ01_RS07345 gltX 1477539..1478993 (-) 1455 WP_001283795.1 glutamate--tRNA ligase -
  LUZ01_RS07350 - 1479550..1480623 (-) 1074 WP_001028376.1 PIN/TRAM domain-containing protein -
  LUZ01_RS07355 radA 1480648..1482012 (-) 1365 WP_023487096.1 DNA repair protein RadA Machinery gene
  LUZ01_RS07360 - 1482498..1484954 (-) 2457 WP_000897132.1 ATP-dependent Clp protease ATP-binding subunit -
  LUZ01_RS07365 - 1484968..1485975 (-) 1008 WP_000149503.1 protein arginine kinase -
  LUZ01_RS07370 - 1485965..1486531 (-) 567 WP_000882069.1 UvrB/UvrC motif-containing protein -
  LUZ01_RS07375 - 1486550..1487011 (-) 462 WP_000551762.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49863.41 Da        Isoelectric Point: 7.0049

>NTDB_id=637745 LUZ01_RS07355 WP_023487096.1 1480648..1482012(-) (radA) [Staphylococcus aureus strain 3581_IA_ST247]
MAKKKVIFECMACGYQSPKWMGKCPNCGAWNQMEEIVEKAANPKHGVKTKELAGKVQKLNSIKHETTPRVLTDSAEFNRV
LGGGIVSGSLVLIGGDPGIGKSTLLLQICASLSQKKKVLYITGEESLSQTKLRAERLDEDSSELQVLAETDLEVIYQTVK
EEQPDLLVVDSIQTIYHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGDE
HHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVNNPSEMFLEERSTNVPGSTIVATMEGTRPILIEVQALVTPTTFNNPR
RMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVKLTEPAVDLSVIVATASSFKDKAVDGLDCYIGEVGLTGEVR
RVSRIEQRVQEAAKLGFKRVIIPKNNIGGWTYPEGIQVIGVTTVHEVLSFALHS

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=637745 LUZ01_RS07355 WP_023487096.1 1480648..1482012(-) (radA) [Staphylococcus aureus strain 3581_IA_ST247]
TTGGCCAAGAAAAAAGTGATTTTTGAATGTATGGCTTGTGGTTATCAATCTCCTAAATGGATGGGGAAATGTCCTAATTG
TGGCGCTTGGAATCAAATGGAGGAAATTGTTGAAAAAGCAGCCAATCCTAAACATGGAGTTAAAACCAAGGAATTAGCAG
GTAAAGTACAAAAATTAAATAGTATTAAACATGAAACAACGCCGAGAGTGTTAACAGATTCAGCAGAATTCAACCGTGTA
TTAGGTGGAGGTATTGTGAGCGGATCGTTAGTACTTATTGGTGGGGATCCAGGTATTGGTAAGTCAACGTTACTTTTACA
AATTTGTGCATCGTTATCTCAAAAGAAAAAAGTACTATATATTACTGGAGAAGAATCGCTTAGTCAGACTAAATTACGTG
CAGAGCGATTAGATGAAGATTCAAGTGAATTGCAAGTATTAGCTGAAACAGATCTTGAAGTTATTTATCAAACAGTAAAA
GAAGAACAACCTGATTTATTAGTAGTGGATTCGATTCAAACAATATATCATCCTGAAATCAGCTCTGCGCCAGGTTCTGT
TTCACAAGTTCGTGAAAGTACACAAAGTTTAATGAATATTGCTAAACAAATGAACATTGCAACTTTTATAGTGGGTCATG
TAACGAAAGAAGGTCAAATTGCTGGCCCAAGATTGCTAGAACACATGGTTGATACTGTGCTTTATTTTGAAGGCGATGAA
CACCACGCATATCGAATTTTGCGAGCTGTTAAAAACCGTTTTGGTTCAACGAATGAAATGGGAATCTTCGAAATGAAGCA
AAGTGGATTAAAAGGTGTAAATAATCCATCTGAAATGTTTTTAGAAGAACGTTCAACAAATGTTCCAGGTTCAACAATTG
TTGCAACCATGGAGGGAACCAGACCAATTTTAATAGAAGTTCAAGCGCTGGTAACTCCAACGACTTTTAACAATCCGAGA
CGAATGGCAACAGGGATTGATCATAATCGATTAAGTTTGTTGATGGCTGTTTTGGAAAAGAAAGAAAATTATCTATTACA
ACAACAAGATGCTTATATCAAAGTAGCTGGCGGTGTAAAGTTAACGGAGCCAGCAGTTGATTTAAGTGTAATTGTAGCAA
CTGCATCTAGCTTTAAAGATAAAGCTGTCGACGGATTAGATTGCTATATTGGAGAAGTTGGTTTAACGGGTGAGGTACGT
CGTGTATCTCGGATAGAACAACGCGTGCAAGAGGCTGCAAAACTAGGTTTCAAACGTGTAATTATTCCTAAAAATAATAT
AGGCGGATGGACATATCCTGAAGGTATACAAGTAATAGGTGTAACTACTGTACATGAAGTATTGTCATTTGCTCTTCATT
CATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-426)

AAA domain (AAA_25)

(77-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.667

100

0.674
  radA Streptococcus pneumoniae Rx1

62.5

98.678

0.617
  radA Streptococcus pneumoniae D39

62.5

98.678

0.617
  radA Streptococcus pneumoniae R6

62.5

98.678

0.617
  radA Streptococcus pneumoniae TIGR4

62.5

98.678

0.617
  radA Streptococcus mitis NCTC 12261

62.5

98.678

0.617
  radA Streptococcus mitis SK321

62.5

98.678

0.617