Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   OCL39_RS11315 Genome accession   NZ_CP106805
Coordinates   2140171..2141139 (-) Length   322 a.a.
NCBI ID   WP_003699352.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10743     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2135171..2146139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCL39_RS11290 (OCL39_11290) - 2135714..2137021 (-) 1308 WP_033910799.1 YadA-like family protein -
  OCL39_RS11295 (OCL39_11295) - 2137007..2137660 (+) 654 WP_260237110.1 IS1595 family transposase -
  OCL39_RS11300 (OCL39_11300) - 2137695..2138453 (-) 759 WP_003687045.1 ABC transporter ATP-binding protein -
  OCL39_RS11305 (OCL39_11305) - 2138537..2139163 (-) 627 WP_003690385.1 FmdE family protein -
  OCL39_RS11310 (OCL39_11310) - 2139208..2140181 (-) 974 Protein_2171 iron chelate uptake ABC transporter family permease subunit -
  OCL39_RS11315 (OCL39_11315) ceuB 2140171..2141139 (-) 969 WP_003699352.1 ABC transporter permease Machinery gene
  OCL39_RS11320 (OCL39_11320) - 2141158..2141349 (-) 192 WP_162098110.1 hypothetical protein -
  OCL39_RS11325 (OCL39_11325) - 2141367..2142332 (-) 966 WP_033910574.1 siderophore ABC transporter substrate-binding protein -
  OCL39_RS11330 (OCL39_11330) fetA 2142484..2144649 (-) 2166 WP_260237112.1 TonB-dependent siderophore receptor FetA/FrpB -
  OCL39_RS11335 (OCL39_11335) - 2145155..2145445 (+) 291 WP_002214868.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 34400.71 Da        Isoelectric Point: 10.5988

>NTDB_id=637736 OCL39_RS11315 WP_003699352.1 2140171..2141139(-) (ceuB) [Neisseria gonorrhoeae strain 10743]
MTAKPFSLNLANLLLPAVLFAVSLSVGIADFRWSDVFSLSDSQQVMFISRLPRTFAIVLTGASMAVAGMIMQILMRNRFV
EPSMAGAGQSAALGLLLMSLLLPAAPLPVKMSVAAVAALIGMLVFMLLIRRLPPTAQLMVPLVGIIFGGVVEAVATFIAY
KNEMLQMLGVWQQGDFSSVLLGRYELLWITGGLAVFAYLIADRLTILGLGETVSVNLGLNRTAVLWSGLIIVALITSLVI
VTVGNIPFIGLVVPNIVSRLTGDRLRQSLPAVALLGASMVLLCDILGRMIVFPFEIPVSTVFGVLGTALFLWLLLRKPAH
AV

Nucleotide


Download         Length: 969 bp        

>NTDB_id=637736 OCL39_RS11315 WP_003699352.1 2140171..2141139(-) (ceuB) [Neisseria gonorrhoeae strain 10743]
ATGACTGCCAAACCTTTTTCCCTCAACCTGGCCAACCTCCTGCTGCCGGCGGTATTGTTTGCCGTCAGCCTGTCGGTCGG
CATTGCCGATTTCCGCTGGTCGGATGTGTTTTCGCTGTCCGACAGCCAACAGGTCATGTTCATCAGCCGCCTGCCGCGCA
CGTTTGCGATTGTGTTGACGGGCGCGTCGATGGCGGTGGCGGGGATGATTATGCAGATTCTGATGCGCAACCGTTTTGTC
GAGCCTTCTATGGCGGGTGCGGGCCAAAGTGCGGCTTTGGGTTTGCTTCTGATGTCCCTGCTGCTGCCTGCCGCGCCGCT
GCCGGTCAAAATGTCGGTTGCCGCCGTTGCTGCGTTAATCGGGATGTTGGTCTTTATGCTGCTGATCCGCCGCCTGCCGC
CGACGGCGCAACTGATGGTGCCGCTGGTGGGGATTATTTTCGGCGGCGTGGTTGAGGCGGTGGCGACGTTTATCGCGTAT
AAAAACGAAATGCTGCAAATGCTCGGCGTGTGGCAGCAGGGCGATTTTTCGAGCGTGCTGCTGGGGCGGTACGAGCTGCT
TTGGATTACGGGCGGTTTGGCGGTGTTTGCCTACCTGATTGCCGACCGGCTGACGATTTTGGGGCTGGGCGAGACGGTGA
GCGTGAATTTGGGTTTGAACCGGACGGCGGTGTTGTGGTCGGGTTTGATTATTGTGGCACTGATTACATCGCTGGTCATT
GTAACGGTCGGCAATATTCCGTTTATCGGGCTGGTCGTGCCGAATATCGTCAGCCGCCTGACGGGCGACAGGCTGCGCCA
AAGCCTGCCTGCGGTCGCCCTCTTGGGCGCGTCTATGGTGCTGCTGTGCGATATTTTGGGACGCATGATTGTGTTTCCGT
TTGAAATTCCGGTCTCTACGGTTTTTGGTGTGTTGGGTACGGCTTTGTTTTTGTGGCTTTTATTAAGGAAACCTGCCCAT
GCCGTCTGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(17-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

41.196

93.478

0.385