Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   U712_RS15370 Genome accession   NC_022898
Coordinates   3070658..3071302 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis PY79     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3065658..3076302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U712_RS15335 (U712_15745) mrpB 3066850..3067281 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  U712_RS15340 (U712_15750) mrpC 3067281..3067622 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  U712_RS15345 (U712_15755) mrpD 3067615..3069096 (+) 1482 WP_003244432.1 Na+/H+ antiporter subunit D -
  U712_RS15350 (U712_15760) mrpE 3069102..3069578 (+) 477 WP_003244015.1 Na+/H+ antiporter subunit E -
  U712_RS15355 (U712_15765) mrpF 3069578..3069862 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  U712_RS15360 (U712_15770) mnhG 3069846..3070220 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  U712_RS15365 (U712_15775) yuxO 3070259..3070639 (-) 381 WP_003228810.1 hotdog fold thioesterase -
  U712_RS15370 (U712_15780) comA 3070658..3071302 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  U712_RS15375 (U712_15785) comP 3071383..3073692 (-) 2310 WP_003242894.1 two-component system sensor histidine kinase ComP Regulator
  U712_RS15380 (U712_15790) comX 3073707..3073874 (-) 168 WP_003242801.1 competence pheromone ComX Regulator
  U712_RS15385 (U712_15795) comQ 3073862..3074761 (-) 900 WP_003243039.1 ComX modifying isoprenyl transferase ComQ Regulator
  U712_RS15390 (U712_15800) degQ 3074946..3075086 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  U712_RS21380 (U712_15805) - 3075308..3075433 (+) 126 WP_003228793.1 hypothetical protein -
  U712_RS15395 (U712_15810) - 3075547..3075915 (+) 369 WP_003243784.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=63771 U712_RS15370 WP_003220716.1 3070658..3071302(-) (comA) [Bacillus subtilis PY79]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=63771 U712_RS15370 WP_003220716.1 3070658..3071302(-) (comA) [Bacillus subtilis PY79]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment