Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   U712_RS12060 Genome accession   NC_022898
Coordinates   2426800..2427567 (-) Length   255 a.a.
NCBI ID   WP_003230055.1    Uniprot ID   A0AAE2SJ05
Organism   Bacillus subtilis PY79     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2421800..2432567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U712_RS12040 (U712_12335) ppsR 2421975..2422787 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  U712_RS12045 (U712_12340) ccpN 2422813..2423451 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  U712_RS12050 (U712_12345) glyS 2423584..2425623 (-) 2040 WP_003230059.1 glycine--tRNA ligase subunit beta -
  U712_RS12055 (U712_12350) glyQ 2425616..2426503 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  U712_RS12060 (U712_12355) recO 2426800..2427567 (-) 768 WP_003230055.1 DNA repair protein RecO Machinery gene
  U712_RS20705 (U712_12360) yqzL 2427604..2427747 (-) 144 WP_003230053.1 YqzL family protein -
  U712_RS12065 (U712_12365) era 2427895..2428800 (-) 906 WP_003230051.1 GTPase Era -
  U712_RS12070 (U712_12370) - 2428781..2429191 (-) 411 WP_003230049.1 cytidine deaminase -
  U712_RS12075 (U712_12380) unpK 2429310..2429681 (-) 372 WP_004398824.1 diacylglycerol kinase family protein -
  U712_RS12080 (U712_12385) ybeY 2429662..2430135 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  U712_RS12085 (U712_12390) pgpH 2430136..2432271 (-) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29328.02 Da        Isoelectric Point: 8.3080

>NTDB_id=63758 U712_RS12060 WP_003230055.1 2426800..2427567(-) (recO) [Bacillus subtilis PY79]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYVAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=63758 U712_RS12060 WP_003230055.1 2426800..2427567(-) (recO) [Bacillus subtilis PY79]
ATGCTGACAAAATGTGAAGGGATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATGTTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGTTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGGCTCTTTTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment