Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   N8I87_RS30035 Genome accession   NZ_CP106798
Coordinates   6491563..6492342 (-) Length   259 a.a.
NCBI ID   WP_263213418.1    Uniprot ID   -
Organism   Streptomyces sp. HUAS 15-9     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6486563..6497342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8I87_RS30025 (N8I87_30025) - 6488410..6489207 (+) 798 WP_263213416.1 GNAT family N-acetyltransferase -
  N8I87_RS30030 (N8I87_30030) - 6489432..6491408 (+) 1977 WP_263213417.1 ATP-dependent DNA helicase -
  N8I87_RS30035 (N8I87_30035) dinR/lexA 6491563..6492342 (-) 780 WP_263213418.1 transcriptional repressor LexA Regulator
  N8I87_RS30040 (N8I87_30040) nrdR 6492906..6493457 (+) 552 WP_263213419.1 transcriptional regulator NrdR -
  N8I87_RS30045 (N8I87_30045) - 6493621..6496515 (+) 2895 WP_263213420.1 vitamin B12-dependent ribonucleotide reductase -
  N8I87_RS30050 (N8I87_30050) - 6496764..6497297 (-) 534 WP_263213422.1 TerD family protein -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28063.80 Da        Isoelectric Point: 7.0665

>NTDB_id=637512 N8I87_RS30035 WP_263213418.1 6491563..6492342(-) (dinR/lexA) [Streptomyces sp. HUAS 15-9]
MTTTADSATITAQDRSQGRLDPVHAMNEATNPEAHKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQAVTVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVED
VFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNSAYEP
IPGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 780 bp        

>NTDB_id=637512 N8I87_RS30035 WP_263213418.1 6491563..6492342(-) (dinR/lexA) [Streptomyces sp. HUAS 15-9]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGGGCCGACTGGATCCGGTGCATGCGATGAA
CGAAGCCACGAATCCCGAGGCGCACAAGCGCTCGCTGCCGGGCCGACCTCCAGGCATCCGGGCGGACAGTTCGGGGCTCA
CCGACAGGCAGCGCCGGGTGATCGAAGTCATCAGGGACTCCGTGCAGCGGCGCGGCTACCCGCCGTCCATGCGGGAGATC
GGCCAGGCCGTCGGACTGTCCAGCACCTCCTCGGTCGCGCACCAGCTGATGGCACTGGAGCGCAAGGGCTTCCTGCGCCG
CGACCCGCACCGCCCGCGCGCGTACGAGGTGCGCGGTTCCGACCAGGCGGTGACGGTGCAGCCGACGGACACCGCGGGCA
AGCCCGCCGCGTCGTACGTCCCGTTGGTGGGCCGTATCGCCGCCGGCGGTCCGATCCTCGCCGAGGAGTCGGTCGAGGAC
GTGTTCCCCCTGCCCCGACAGCTCGTGGGTGACGGGGAGCTGTTCGTCCTCAAGGTGGTCGGCGACTCCATGATCGAGGC
CGCGATCTGCGACGGCGACTGGGTCACCGTGCGCCGTCAGCCGGTCGCCGAGAACGGCGACATCGTGGCCGCCATGCTGG
ACGGCGAGGCCACCGTCAAGCGCTTCAAGCGCGAGGACGGCCATGTCTGGCTCCTCCCGCACAACTCGGCCTATGAGCCG
ATCCCCGGCGACGACGCGACCATCCTGGGCAAGGTCGTCGCGGTGCTGCGGCGCGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(141-253)

LexA DNA binding domain (LexA_DNA_bind)

(51-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.445

81.467

0.378